Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00177 ATGGCTTTGCAGGCTCTGAGTTCTCCGACTGCAGCGACTCCTTTCAATAGATATGAAGATGATGAAGAAGATGTGGAGCTCCAGCTCCATTCCCTTGAGTCACGCGCAAAGAGAAAGCGCACCAAACGACCGCGTTTGGAAAATTCACCTACAGAAGAAGAGTACTTGGCTCTTTGTCTCATCATGCTTGCTCAGAGTGGAAGCAGCAACAACAGCAGTAGCAACAAGAACTCTGTGCTTCAGTTCCGTGAAGTTCAAGCACCGCCGCCTGCTTTGAAATTGTCTTACAAGTGTAGTGTATGCAACAAGGCCTTCCCTTCTTACCAAGCACTCGGAGGACACAAGGCAAGTCACCGGAAGTCCTCCTCTCCGTCGGAAGCTGCTGCTGACAACACATCCACTTCAACTTCTACCACCACCGCCACCACTAGTGGTAAAGCGCATGAGTGTTCTATTTGTCACAAGAGTTTTCCGACGGGTCAGGCACTTGGGGGTCACAAGAGGTGTCACTATGACGGTGGAAACAACAGCACGGGTGTCGTGACATCATCGGAAGGGGGTGGAAACAACAGCACTTCCCATGGCCACCGTGGATTTGACTTGAACCTGCCAGCTTCATTGCCGGAACTGTGGCCAGTGATCATGGGCAGGGACTTGGGAAAAATTACCAGGAAATTATCAGAGGAACAGGAAGTGGAGAGTCCTCTACCCGCGTCCAAGAAGCCTCGTCTATTGTGGAATCAAAACCAGGAAGCTTCTTTTGCATAA 768 0.5026 MALQALSSPTAATPFNRYEDDEEDVELQLHSLESRAKRKRTKRPRLENSPTEEEYLALCLIMLAQSGSSNNSSSNKNSVLQFREVQAPPPALKLSYKCSVCNKAFPSYQALGGHKASHRKSSSPSEAAADNTSTSTSTTTATTSGKAHECSICHKSFPTGQALGGHKRCHYDGGNNSTGVVTSSEGGGNNSTSHGHRGFDLNLPASLPELWPVIMGRDLGKITRKLSEEQEVESPLPASKKPRLLWNQNQEASFA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00177 255 Gene3D Classic Zinc Finger 94 170 - -
Pte5g00177 255 SUPERFAMILY beta-beta-alpha zinc fingers 96 170 IPR036236 -
Pte5g00177 255 Coils Coil 15 42 - -
Pte5g00177 255 MobiDBLite consensus disorder prediction 226 255 - -
Pte5g00177 255 MobiDBLite consensus disorder prediction 116 144 - -
Pte5g00177 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Pte5g00177 255 MobiDBLite consensus disorder prediction 114 144 - -
Pte5g00177 255 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 207 IPR044653 GO:0003700
Pte5g00177 255 FunFam Zinc finger protein ZAT10 93 170 - -
Pte5g00177 255 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pte5g00177 255 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Pte5g00177 255 MobiDBLite consensus disorder prediction 1 50 - -
Pte5g00177 255 SMART c2h2final6 148 170 IPR013087 -
Pte5g00177 255 SMART c2h2final6 96 118 IPR013087 -
Pte5g00177 255 Pfam C2H2-type zinc finger 147 172 - -
Pte5g00177 255 Pfam C2H2-type zinc finger 96 120 - -
Pte5g00177 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00177 Pte-Chr5 1916485 1917827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00177 1 244 C2H2 Transcription Factor Family AT1G27730 46.245 7.09e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g00177 zf-C2H2_6 5.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00177 - - qsa:O6P43_011810 269.626