Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00176 ATGAGTTGCAACGGTTGCCGTATCCTTAGAAAGGGTTGCAGTGATGAATGTGTGCTTCGACACTGTCTTCAAGGAATAGACACCCCCACAGCTCAAGCCAATGCCACAATCTTCGTCGCTAGGTTCTTCGGCCGTGCCTGTCTCATGTCTTTCATCTCAGCTGTCCCAAAGCATCAAAGGCCAGCTTTGTTTCAGTCTCTTCTGTATGAAGCAGTGGGACGCAGTCTGCACCCTGTAGATGGAGCTATTGGACTTTTATGGACTGGAAACTGGAATATATGTCAGCTGGGGGTGGACACTGTGCTGAGAGGCGATACTTTGAGTTCCCTGCAACAGCAAGTCTTGAATGGAATCGCAATTCCGAAAGTTTTCTTTCAAGTGTGTCAACCTCCTGCAAACTCTTCAAGTCAGCGTAACACGGGACATCGTTCCAGAAGAACAAAGACACTGGAAAGAAAATCTTTTAGTGGGGCAGATAATTTTCAGGCACATAATCTTGATTTGTGCTTGTTGACACCAAGGCTGCCGGCTACAATGGTTTCAAGTGGTGAAAGACATTTTGATAGATAA 570 0.4614 MSCNGCRILRKGCSDECVLRHCLQGIDTPTAQANATIFVARFFGRACLMSFISAVPKHQRPALFQSLLYEAVGRSLHPVDGAIGLLWTGNWNICQLGVDTVLRGDTLSSLQQQVLNGIAIPKVFFQVCQPPANSSSQRNTGHRSRRTKTLERKSFSGADNFQAHNLDLCLLTPRLPATMVSSGERHFDR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00176 189 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pte5g00176 189 MobiDBLite consensus disorder prediction 131 154 - -
Pte5g00176 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 131 - -
Pte5g00176 189 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00176 Pte-Chr5 1910990 1911867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00176 1 117 AS2 family AT3G49940 68.376 1.52e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte5g00176 LOB 8.9e-24 No_clan