Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00148 ATGGAGTGTTTGCAGTTGCACTCGGATGTGGATAGTGTCAAGGGACCTTGGAGCAATGAAGAGGACGACTTGTTGAAGAAGTATGTACAGCGTTACGGCCCTCGTAACTGGTCGGTTATTGCCATGTCAATCCCGGGTCGCTCCGGGAAATCTTGCAGGCTCCGATGGCGCAACAAGCTATCCCCGGAGGTGGAGCACAGGCCATTTAGCCATGAAGAAGACGATATCATCATCAAGGCTCATTCCAAGTATGGTAATAGGTGGGCCACCATAGCTAGGCTCCTCCATGGTCGTACAGACAACGCTGTAAAGAACCATTGGAACTCTACTCTTAAACGAAAGTTCTCATCTTTAATCAGCGCTCATGAAGAAGTTGCCACTGCCGAGGAGTCATCCTTACATCCTGAGAAAAGATCTGCGGATCGTTTTTCCGTCAAGTCAAATATTCCGGGTACTTCGTCCGGATCCGATAGTACCTGTGTTGCTAAGCACGAAGGCAGGGGTCACCGGTCTGTAGCTCCATCATCCGCAAGAACAGCAGGACGCAAAGTTAAACAGGAACAGAGATTGTACATTACTGATAAGATTTGA 591 0.4873 MECLQLHSDVDSVKGPWSNEEDDLLKKYVQRYGPRNWSVIAMSIPGRSGKSCRLRWRNKLSPEVEHRPFSHEEDDIIIKAHSKYGNRWATIARLLHGRTDNAVKNHWNSTLKRKFSSLISAHEEVATAEESSLHPEKRSADRFSVKSNIPGTSSGSDSTCVAKHEGRGHRSVAPSSARTAGRKVKQEQRLYITDKI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00148 196 FunFam MYB transcription factor 14 65 - -
Pte5g00148 196 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Pte5g00148 196 Gene3D - 67 142 - -
Pte5g00148 196 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pte5g00148 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Pte5g00148 196 CDD SANT 68 111 IPR001005 -
Pte5g00148 196 SMART sant 65 113 IPR001005 -
Pte5g00148 196 SMART sant 13 62 IPR001005 -
Pte5g00148 196 MobiDBLite consensus disorder prediction 126 188 - -
Pte5g00148 196 PANTHER MYB PROTEIN-RELATED 14 141 - -
Pte5g00148 196 CDD SANT 16 60 IPR001005 -
Pte5g00148 196 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Pte5g00148 196 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pte5g00148 196 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Pte5g00148 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Pte5g00148 196 Gene3D - 13 65 - -
Pte5g00148 196 MobiDBLite consensus disorder prediction 145 160 - -
Pte5g00148 196 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00148 Pte-Chr5 1690876 1691897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00148 11 143 MYB Transcription Factor Family AT3G50060 66.165 1.05e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g00148 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00148 K09422 - mnt:21409653 208.379