Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00143 ATGGAGTCAGTGGCTGCTGATTCATCTTCTCCACCTCCTGTGAGAGGACCGCAAGTTGAGCCTCCTGCAGCTTTGCCAGAGGCAGAAAGTTCTATGCAAGATACACCTTCTGGATTACCTTCATGGACCAAAAATTTGAAACATCCCCAGCCAGTTACTGGGATACAAGTTGACCCGAATAATGAAAGTGCAGGGAAGTCAGCTTTAGCTCGTTTTACCAGTGGGTTATCATTTAAATTGTCTCCTAAATCTCCTCCAGCATATGACATTTCTGATGGAGCCAATACTCAACCTGGTTTAATTGGAGCTATTGCAAAAGGAATAGTTGATTCTTCTAAAAATGCTGTGAAAGCTGTGCAAGTTAAGGCTAGGCATGCTGTTTCTCAAAATAAGCGCAGATACCAGGAAGGGGAATTTGATCTGGATATGACATATATCACAGAAAATATCATTGCCATGGGTTTCCCCGCTGGTGACATGAGCTCTGGATTTTTTGGATATGTTGAAGGATTTTATAGAAATCACATGGAAGAAGTGATTAGATTCTTTGAAACTCATCACAAGGACAAGTACAAAGTGTATAACCTTTGTTCTGAACGGCTGTACGATGCGTCATTATTTGAAGGAAAGGTGGCTAGTTTCCCATTTGATGATCATAATTGCCCACCAATTCAACTTATAATATCATTTTGTCATAGTGCTTACTCATGGTTAAAGGAGGATATAGAGAATGTTGTGGTGGTCCACTGTAAGGCTGGAATGGCAAGGACAGGATTAATGATTTCAAGTCTTCTTTTGTTCTTGAAGTTCTTTCCAACTGCTGAGGAATCTATTGACTACTACAACCAGAAGAGATGTATTGATGGAAAAGGCCTCGTTCTGCCCAGTCAGATTAGATATGTCAAATATTTTGAACGTGTATTGACATACTTCAATGGTGTAAACCCACCTCCTCGCAGGTGTATGCTTAGGGGCTTTCGGCTGCTCAGGTGCCCATATTGGATCAGGCCTGAGATTACCATCTCAAATCATAGTGGTGTTATTTTCTCCACCAAGAAGCATCCCAGAACTAAGGATCTTTCACCGGAAGACTTTTGGTTTAGTGCACCAAAGAAGGGAGTCATGGTCTTTGCGTTGCCTGGGGAACCAGGGCTGACAGAGTTATGTGGAGACTTCAAGGTCCATTTTCAAGACCGCCAGGGAGATTTTTACTTTTGGTCGAACACAACAATGACTGAGAACAGAAAAATATTGACCACCAGTGACCTTGATGGTTTTGACAAGAGAAAACTGCCTTCCCCTGGATTCCAAGTCGAGGTTGTGCTAGTGGACTACAATGACAACGTTCCCACTGTTAAGCCTGAAACTACTGCTAAGAAATCGGATGATAGCTCAAGTACTAGTGCAGAGCCAGTTGACACAGCCACCAAAACGCCTGCCCCAAACCCAAAGAAAGACGCAGAAAGTCAGGATGGAGATGATGTCTTCTCTGATGGAGAGGAGTCGGAATCTTCAAAAAAGCAGACTAAGGAAGGTTCGTCTACAGGAGGAACTGTTACTGATACCAATACTCAGCCCCAACCTCATACAGTTCCAACTCAAGTTGCTAGTATCACTCATGCAACAGAGAAGGTCTCTCTAGGAAATACTTGCTCTGTGCCAACACCTAGTTCCACTGAACCAAAAAATGTTACTGAAAGTAAAGCAACAACCAATGAAACTCCCAGCTCCCATAGTGAATTCAAGGCTATGGCTGCCGATGCTTCTGTGTTTTCATTTGGAGATGATGAAGACTATGAAAGTGAGTGA 1809 0.4284 MESVAADSSSPPPVRGPQVEPPAALPEAESSMQDTPSGLPSWTKNLKHPQPVTGIQVDPNNESAGKSALARFTSGLSFKLSPKSPPAYDISDGANTQPGLIGAIAKGIVDSSKNAVKAVQVKARHAVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIRFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGVNPPPRRCMLRGFRLLRCPYWIRPEITISNHSGVIFSTKKHPRTKDLSPEDFWFSAPKKGVMVFALPGEPGLTELCGDFKVHFQDRQGDFYFWSNTTMTENRKILTTSDLDGFDKRKLPSPGFQVEVVLVDYNDNVPTVKPETTAKKSDDSSSTSAEPVDTATKTPAPNPKKDAESQDGDDVFSDGEESESSKKQTKEGSSTGGTVTDTNTQPQPHTVPTQVASITHATEKVSLGNTCSVPTPSSTEPKNVTESKATTNETPSSHSEFKAMAADASVFSFGDDEDYESE* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00143 602 CDD PTP_PTEN 142 306 IPR045101 GO:0016791
Pte5g00143 602 ProSitePatterns Tyrosine specific protein phosphatases active site. 248 258 IPR016130 GO:0016311|GO:0016791
Pte5g00143 602 Gene3D Protein tyrosine phosphatase superfamily 117 314 IPR029021 -
Pte5g00143 602 MobiDBLite consensus disorder prediction 1 66 - -
Pte5g00143 602 ProSiteProfiles Phosphatase tensin-type domain profile. 132 311 IPR029023 -
Pte5g00143 602 MobiDBLite consensus disorder prediction 450 475 - -
Pte5g00143 602 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 285 IPR000387 GO:0016311|GO:0016791
Pte5g00143 602 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 109 569 - -
Pte5g00143 602 MobiDBLite consensus disorder prediction 30 66 - -
Pte5g00143 602 MobiDBLite consensus disorder prediction 509 579 - -
Pte5g00143 602 MobiDBLite consensus disorder prediction 450 580 - -
Pte5g00143 602 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 117 314 - -
Pte5g00143 602 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 145 317 IPR029021 -
Pte5g00143 602 SMART PTEN_C2_2 316 444 IPR014020 -
Pte5g00143 602 ProSiteProfiles C2 tensin-type domain profile. 318 445 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00143 Pte-Chr5 1641178 1645858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00143 28 603 Protein tyrosine phosphatase (PTP) family AT3G19420 67.672 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00143 K01110 - qsa:O6P43_011754 885.945