Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00136 ATGGCTCAGGTTCCAGTTCAGCCTCAGAATGTGATGCCTGGGACTAACGGCGGTCCTGCGGTACCGGTTGTGCAGGGTGTTGCGAACGCGAATCAGTTTGGGACCACATCGCTGTACATCGGAGATCTTGATCAGAACGTGACGGATTCACAGCTGTATGACCTGTTTAACCAAGTGGGTCAGGTGGTTTCGGTTAGGGTTTGCAGGGATTTGACAACCCGTAGGTCACTCGGTTATGGGTATGTCAATTATAGCAACCCTCAAGATGCTGCTAGGGCAATTGATATCCTGAACTTCACTCCTCTCAATACAAAGACCATCCGAATAATGTATTCTCATCGTGACCCTAGCGTTCGCAAAAGTGGTCAAGGGAATATATTTATTAAGAATTTGGACAAGGGAATCGACCATAAAGCACTACATGACACATTCTCTGCATTTGGGAACATACTCTCTTGTAAGGTAGCTACAGATTCCTCAGGCCAATCAAAGGGCTATGGTTTTGTACAATTTGAAAGTGAAGAATCTGCTCAAAAAGCTATCGAGCAGCTAAATGGCATGCTTATGAATGACAAGCAAGTTTATGTGGGACCGTTTCTACGTAAGCAAGACAGAGAAAGTGCTTTAGACAAGACCAAATTCAATAATGTCTATGTTAAAAACTTATCTGAATCAACAACTGATGAAGACTTGAAAAAAGCTTTTGAGGAATATGGAACCATCACAAGTGCTGTTGTGATGAGGGATGCAGATGGGAAATCAAAGTGTTTTGGATTTGTTAACTTTGAGAATCCTGAAGATGCTGCAAGATCTGTTGAGGGTCTTAATGGAAAGAAGTTTGATGGTAAGGAATGGTATGTTGGGAAAGCCCAGAAGAAATCTGAAAGGGAAATGGAATTGAAGCTTCGGTTCGAACAGAGTATGAAAGAGGCTTCTGACAAATACCAAGGAGCTAATTTATACATAAAGAACTTAGATGACACTTTTGGCGATGAGAAACTCAAGGAGCTGTTTTCACCTTTTGGAACCATTACCTCATGCAAGGTAATGCGAGATCCAAATGGAATAAGCAGGGGGTCTGGATTTGTTGCATTCTCAACTCCTGAGGAGGCTTCTAGAGCACTTTTGGAGATGAATGGGAAAATGGTTGTTGGCAAACCTCTGTATGTTGCTCTTGCACAAAGGAAAGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTGCTCAAATGAGGCCAGTAGCAATAGCGCCATCTGTTGGTCCTCGTGTTCAAATGTATCCTCCTGGTGCTCCTGGAATTGGGCAGCAAATATTTTATGGTCAAGCTCCACCTGCTATGATTCCTTCACAGCCGGGATTTGGATACCAGCAGCAGCTTGTACCAGGTATGAGGCCTGGTGGGGCTCCAATGCCAAACTTCTTCATGCCAATGGTTCAGCAGGGGCAGCAAGGGCAACGGCCTGGAGGCAGGCGTGGAGGGTCTATTCAACAGGCCCAGCAGCCTGTTCCCCTGATGCAGCAGCAGATGCATCCAAGGGCCCGTGTCTTCCGGTATCCTTCTGGCCGTGGCATGCCAGATTTACCCATGCCTGGTGTTGGAGGCATGTTTTCTGTCCCATATGACATGGGTGGTGTGCCCCTTCGTGATGCTGCCGTCCCTCAGCAAATCCCAATTGGGGCTTTGGCTTCTGCCCTGGCAAATGCTTCCCCAGAGCAGCAGAGAACAATGCTGGGTGAGAGTCTCTATCCATTGGTGGAACAGCTTGAACCTGATAATGCAGCGAAAGTGACAGGTATGCTCTTAGAGATGGATCAGCCTGAGGTTCTCCACCTCCTCGAGTCACCTGAAGCGTTGAAAGCCAAGGTCGCGGAGGCAATGGATGTCCTCAGGAACGTTGCACAGCAGCAGCAGCAGACTGCTGACCAGTTGGCCTCATTATCACTCAACGAGAACCTTGTCTCTTGA 1965 0.4697 MAQVPVQPQNVMPGTNGGPAVPVVQGVANANQFGTTSLYIGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAIDILNFTPLNTKTIRIMYSHRDPSVRKSGQGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFESEESAQKAIEQLNGMLMNDKQVYVGPFLRKQDRESALDKTKFNNVYVKNLSESTTDEDLKKAFEEYGTITSAVVMRDADGKSKCFGFVNFENPEDAARSVEGLNGKKFDGKEWYVGKAQKKSEREMELKLRFEQSMKEASDKYQGANLYIKNLDDTFGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVGKPLYVALAQRKEDRRARLQAQFAQMRPVAIAPSVGPRVQMYPPGAPGIGQQIFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGGSIQQAQQPVPLMQQQMHPRARVFRYPSGRGMPDLPMPGVGGMFSVPYDMGGVPLRDAAVPQQIPIGALASALANASPEQQRTMLGESLYPLVEQLEPDNAAKVTGMLLEMDQPEVLHLLESPEALKAKVAEAMDVLRNVAQQQQQTADQLASLSLNENLVS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00136 654 PANTHER RNA BINDING PROTEIN 35 98 - -
Pte5g00136 654 FunFam Polyadenylate-binding protein 205 300 - -
Pte5g00136 654 CDD RRM3_I_PABPs 214 293 - -
Pte5g00136 654 Gene3D - 300 403 IPR012677 -
Pte5g00136 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 630 IPR006515 GO:0003723
Pte5g00136 654 CDD RRM4_I_PABPs 317 395 - -
Pte5g00136 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pte5g00136 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Pte5g00136 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Pte5g00136 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pte5g00136 654 Gene3D - 125 197 IPR012677 -
Pte5g00136 654 SMART poly_2 569 632 IPR002004 GO:0003723
Pte5g00136 654 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Pte5g00136 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Pte5g00136 654 CDD RRM2_I_PABPs 122 198 IPR045305 -
Pte5g00136 654 CDD RRM1_I_PABPs 37 116 IPR034364 -
Pte5g00136 654 SUPERFAMILY RNA-binding domain, RBD 215 399 IPR035979 GO:0003676
Pte5g00136 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Pte5g00136 654 FunFam Polyadenylate-binding protein 301 406 - -
Pte5g00136 654 FunFam Polyadenylate-binding protein 23 124 - -
Pte5g00136 654 Gene3D - 200 299 IPR012677 -
Pte5g00136 654 SMART rrm1_1 216 288 IPR000504 GO:0003723
Pte5g00136 654 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte5g00136 654 SMART rrm1_1 319 391 IPR000504 GO:0003723
Pte5g00136 654 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pte5g00136 654 Gene3D - 28 124 IPR012677 -
Pte5g00136 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte5g00136 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Pte5g00136 654 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Pte5g00136 654 SUPERFAMILY PABC (PABP) domain 499 642 IPR036053 GO:0003723
Pte5g00136 654 SMART rrm2_1 319 391 IPR003954 GO:0003676
Pte5g00136 654 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pte5g00136 654 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pte5g00136 654 SMART rrm2_1 37 110 IPR003954 GO:0003676
Pte5g00136 654 FunFam Polyadenylate-binding protein 553 635 - -
Pte5g00136 654 FunFam Polyadenylate-binding protein 125 198 - -
Pte5g00136 654 Gene3D - 552 637 - -
Pte5g00136 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00136 Pte-Chr5 1577089 1582157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00136 1 649 Eukaryotic Initiation Factors Gene Family AT4G34110 71.582 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00136 K13126 - gmx:100813735 1082.4