Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00135 ATGGAGATTGCACAGCCGGCGCCACCGCCGTCCTTCGAAGATGATCCTAATGGCGATAACTTCATAGCCTCTACTTCATCGTCTTCGTCGGCTCATAATCCAAAGGAAAAGAATGACGAATTGAAGGCATCGGATAGGTCTGCCAAGTTCGACGTTGAAGAGGATGAGGACGAGGATGTGTGTCGAATATGCCGTAATCCCGGTGATGCTGATAATCCTCTCAGGTATCCATGTGCTTGTAGCGGAAGCATTAAGTTTGTGCATCAGGATTGCCTTCTTCAGTGGCTCAATCACAGCAACGCCAGACAGTGCGAGGTTTGCAAACATGCGTTTTCCTTTTCTCCTGTTTATGCTGAAAATGCTCCCGCAATGCTACCTTTTCAGGAGTTCGTTGTTGGAATGGCTATGAAAGCTTGCCATGTCCTGCAATTCTTTTTGCGCCTTAGTTTTGTCCTTTCTGTTTGGCTTCTGATAATACCTTTCATCACATTTTGGATATGGAGATTAGCTTTTGTGAGGAGTTTTGGTGAAGCCCACAGATTGTTTCTAAGTCATTTATCAACTACAGTAATCCTAACTGATTGTCTGCACGGGTTCCTACTTTCAGCAAGCATTGTGTTCATCTTTCTTGGAGCAACCTCTTTGAGGGATTGCTTTAGGCACGTAAGGGAGCTTGGAGGACAAGATGCAGAAAGAGAAGATGAAATGGAGAGAAATGGTGCCCGCGTTGCTAGAAGACTCCCTGGACAAGCTAATAGGAATGCTGATGGTGATGTAAATGCTGAAGATGTTGGTGGTGCTCAAGGAAATCCTGGTATACAAGGTCAAGTCATGAGAAGGAATGCTGATAATATTGGTGCTCGTTGGGAGATGCAAGCAGCAAGACTTGAAGCACATGTTGAGCAGATGTTTGATGGCCTTGATGATGCTGATGGTGCAGAGGATGTCCCTTTCGATGAACTCGTTGGCATGCAGGGACCTGTATTTCATCTGGTTGAAAATGCGTTTACCGTGTTAGCTAGCAATATGATATTCCTCGGCGTCATGGTCTTGTTACCTTTTTCGCTGGGAAGAGTAGTACTTCACTATATGTTGGTTCTTTTTTCAGCTGGTCCTGTGATATCAACATTTATGCCACTTACAGACACAGCCTTCTCCCTGGTGAACATTACGTTGAAAAATGCATTAATTTCTGTAGCAAATCTATCACCTGAAGGCCATGATGGCAGTCTGGTTGGTGAGGCAGCTGAAAATTTGAAACTTAATGCGAGTGGAGTAGGTCAAATGGTGAATAACTTAAGTGCACCTCTTTCGTCTGACCTTTTGAAAGGAGAATCTATCGGGAGTTCAAGACTTTCAGATGTTGCTACTCTTGCAGTTGGGTATCTGTTTATTATTGCTCTAATTCTGTGCTACCTTGGTGTGATTGCTTTAATCCGTTATATAAAGGGTGAGCCGATAACTTTTGGAAGATTCTATGGCATTTCTTCTATAATAGAGGCCATTCCATCTCTCTTCCGGCAGTTTTTGGCTGCAATGAGACATTTAATGACAATGTTGAAGGTGGCTTTCCTTCTTGTCATTGAACTTGGCGTGTTTCCTCTAATGTGTGGATGGTGGCTTGACGTGTGTACAATAAAGATGTTCGGGAAAACAATGGCTCACAGAGTTCAGTTCTTCTATGCTTCTCCTCTAGCTAGTTCACTGGTTCATTGGGTTGTTGGAATTGTCTACATGCTTCAAATAAGTATATTTGTCAGCCTTTTGCGAGGGGTCTTGCGCAATGGAGTTTTGTACTTCCTACGTGATCCAGCTGATCCAAATTACAACCCTTTCCGTGATTTAATTGATGACCCTGTGCACAAGCATGCTCGAAGAGTTCTGTTATCTGTTGCAGTTTATGGTAGTTTGATAGTGATGTTGGTTTTTTTACCTGTGAAACTGGCTATGAGAATGACATCATTCATTTTCCCCCTTGATATATCGGTTTCTGATCCGTTCACCGAGATTCCAGCTGACATACTTCTCTTCCAGATCTGCATTCCCTTTGCTATTGAGCATTTTAAATTGCGGACAACAATCAAATCCTTTCTGCGATATTGGTTCGTCGCAGTGGGTTGGGTACTCGGTTTAACAGATTTCTTATTGCCAAGACCTGAGGAAAATGGCAATCAAGAAAATGTCAATGGGGACCAAGCTAGACCAGAGAGAATCCAAGCTGCACGCCCAAGGGCCGAGGAACCAGTTGTGGGAGCTCATGATGCTTATAGGGGAGCTCTTGTGATTGGAGATTTGAATGCCTCGGAGGGCTACGATAATGATGAACAATCTGATTCTGATTATGGATTTGCTTTCCGGATAGTTCTGTTGTTGCTTGTGGCCTGGATGACGCTCCTTGTCCTCAACTCTGCCTTGATCATCGTACCGATATCATTTGGACGGGCACTTTTTAACGTTGTTCCTCTTCTACCTATAACTCATGGCATAAAGTGCAATGATCTATATGCTTTCGTCATTGGAAGCTATGTGATTTGGACGGGAATTGCTGGAGCTAGGTATTCTACTGAACAAATTAGAAGAAAGAGAGCTTCAGTTTTATTTAACCAAATATGGAAATGGTGTTGCATTGTCATTAAGAGTTCTGCACTCCTATCTCTATGGATATTTGTCATCCCAGTACTGATTGGACTGCTTTTTGAGCTTCTGGTGATTGTGCCCATGAGGGTTCCTGTTGATGAAAGCCCAGTTTTTCTCCTCTATCAGGATTGGGCATTAGGCCTTATCTTTCTCAAGATCTGGACTAGATTGGTAATGTTGGATCACATGATGCCACTCGTTGATGAAAGCTGGCGTATTAAATTTGAAAGAGTGAGAGAAGATGGTTTCTCTGGGCTGCAGGGCCTATGGGTCCTAAAGGAGATTGTGGTCCCAATCATAACAAAGCTATTGACGGCTTTGTGCGTGCCTTATGTTTTAGCCAAAGGCGTCTTCCCTGTGCTTGGATATCCGTTGGTAATTAATTCTGCAGTTTACCGATTTGCCTGGTTGGGATGCGTTAGCCTGAGCTTTCTGTGCTTTTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTTCACAACTCAATACGTGACGATCGTTATCTGATTGGGCGGAGACTCCATAACTATGGTGAAGAAACTCAAACAAAGACCTATGGAACAGAAATGCTGGATGATAGGCAAAGTCCACATACACCACCCAACGGTCCGGTAGTTCACAATCGTGAATTAGATGTTGGATTGCGGCACAGACATGCTCATATAGGTGGTTGA 3312 0.4357 MEIAQPAPPPSFEDDPNGDNFIASTSSSSSAHNPKEKNDELKASDRSAKFDVEEDEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPAMLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLSHLSTTVILTDCLHGFLLSASIVFIFLGATSLRDCFRHVRELGGQDAEREDEMERNGARVARRLPGQANRNADGDVNAEDVGGAQGNPGIQGQVMRRNADNIGARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVMVLLPFSLGRVVLHYMLVLFSAGPVISTFMPLTDTAFSLVNITLKNALISVANLSPEGHDGSLVGEAAENLKLNASGVGQMVNNLSAPLSSDLLKGESIGSSRLSDVATLAVGYLFIIALILCYLGVIALIRYIKGEPITFGRFYGISSIIEAIPSLFRQFLAAMRHLMTMLKVAFLLVIELGVFPLMCGWWLDVCTIKMFGKTMAHRVQFFYASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMTSFIFPLDISVSDPFTEIPADILLFQICIPFAIEHFKLRTTIKSFLRYWFVAVGWVLGLTDFLLPRPEENGNQENVNGDQARPERIQAARPRAEEPVVGAHDAYRGALVIGDLNASEGYDNDEQSDSDYGFAFRIVLLLLVAWMTLLVLNSALIIVPISFGRALFNVVPLLPITHGIKCNDLYAFVIGSYVIWTGIAGARYSTEQIRRKRASVLFNQIWKWCCIVIKSSALLSLWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIKFERVREDGFSGLQGLWVLKEIVVPIITKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCVSLSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEETQTKTYGTEMLDDRQSPHTPPNGPVVHNRELDVGLRHRHAHIGG* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00135 1103 PANTHER SSM4 PROTEIN 41 1059 - -
Pte5g00135 1103 FunFam Probable E3 ubiquitin ligase SUD1 46 119 - -
Pte5g00135 1103 CDD RING_CH-C4HC3_MARCH6 61 109 - -
Pte5g00135 1103 ProSiteProfiles Zinc finger RING-type profile. 61 108 IPR001841 -
Pte5g00135 1103 ProSiteProfiles Zinc finger RING-CH-type profile. 53 114 IPR011016 GO:0008270
Pte5g00135 1103 SMART ringv_2 60 108 IPR011016 GO:0008270
Pte5g00135 1103 Pfam RING-variant domain 61 107 IPR011016 GO:0008270
Pte5g00135 1103 MobiDBLite consensus disorder prediction 18 32 - -
Pte5g00135 1103 SUPERFAMILY RING/U-box 55 111 - -
Pte5g00135 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 119 IPR013083 -
Pte5g00135 1103 MobiDBLite consensus disorder prediction 1 51 - -
Pte5g00135 1103 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00135 Pte-Chr5 1569975 1577070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00135 10 123 C3H Transcription Factor Family AT1G50440 28.689 4.43e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00135 K10661 - qsa:O6P43_011737 1749.18