Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00132 ATGCCAGGTGAGAGGAGAACCATTGGGTCTTTCCCCGAGGTTTTTAACATCAGCCAAGGGTCTTCTTCCAGGAGCTCTGATATGGCTCAGCAAACTTCCTCAAATGACATGTTCAATCCAGTAGATAGCCGGTTCCCCGATTACATGATAACTCCTCATGATCCTGCTTGTGAAAATACTGAGATTCCAAATCTTCAGAGCTTCAATGGTACGAATGCTGGTGAATCTAGTTCCAAATTGGATTTCCAAAGCCAAGTCTGTGATGATAGAATGAAAGTAGAAGATTGCTGGCCTGCTTCATTTAGTGCTCGTTCAGGAACTAGCCTCAGGCTGGAAGAAAGGCAACTTGCATCAAGTGATTTATCTTTTTCTGGTAGGTCAAATACACATGTATGTGGAAACCAACTGCGAAGGGACCATTTCCAAGGTTCCAGTTCAAGTCAGGTGCCACAAAATGTAAATTTTAGCGTGGGATATCTTGGTAGTGGTGCTAATTTTGTGCAGGGCATGAATGGCGAGTTTGATAGTTGCAAATCTCATGGGATGGAAATGGACCAGACAACTTCTACTGGTGCTTCATTTGATCATGTAGGATCTTCAGCTGGAACCTCTGGGTTTATGGTGGATGAAGATAGCGGTGAATCAAGTTCTTTGGGGAATTTAGGTTCTTCCTGCAAGAGAAAGGCCCTCGAAGGAAGTTCCAGTCATTCGTGTCTGGGTGGAAGCTCAAGCACTCTTATCAATGCAGAAGATGTTGCATGGGCTAACAATTTACCAAGTAGTTCAAGTATGTCTACACTCTCACAGAACATCCCAATTTTTGATTCTCCAGTATTTCAGAATCCAAGAGCTAGGATTGCAACGAGAGGAATGGCTTCTGATTCAATCCCTTTGCCAAGGATTGGGCGCAGCTCAACAAACCCTCTGAGAAATTTTGGGAGGAGAATAGACACTGGGCAGCATCTTGAGATTTTACCTCTTAATCTGTCATCAACTGGAACTGCTAGGAATTCCAACTTTTCCCCACCTCACCATCCATCAATAAGCGAGGCATCAAGTGATGCTTTGGAATTGAGATTAACAGCAGGAGGTGCAACTTCTGGCTCTGACCAAATCCAGTCAACTGCTACGAATGCGACCGGGCTATCCGCAAATTTTCAACATTTTGCTTGGGGTGGATCTTCTAATGCAATGGCTGACAGTGTACCGAATCCTCATATTCCCAGGGAGAGAGCAGTTCTCGAAGAATCAAATCCAAGGATTGGCACTAGAATCAATTCTGAGCATGCTTTTTATGTACCTGTGGCTGAGATGAGAAATTCAGGTAATGATTCAGCCTGGAATGTGGCTGCTGGTGGTATGAGTTCCTCTGGAGGTGTACCTTCTACAATTTGGGCTGGATCAAGTTCAAACTTTAATCCTTTCCCTGCCCCTACCTCTGTTCTTCCCAACAATGTTCCATCACATAACCAGAGATTGTCAGATGTTACACCTTGGTCTTTATTTCCATCTATTGGCTCTGATCCTGGAGTGCATAATGGTCACTTTAGCTCATTGACTGCTGGACCTTCTAGTTCTTCTCAGGACTCGGTTATTCCCAACAGATCCAATAGACAGGGCCACCACCAACCATATCCCAGATCATCATTCTCAATGGAGAGACGAGGTAATGGCATTCCTAATGCATCTCATTCATTGAGGGGATTAGTTGCTGACATTGAAGGGAGGCGCCGACTGATATCTGAGATTCGCCAAGTCTTGAATGCCATGCGCAGGGGAGAGAACTTACGAGCTGAGGATTACATGCTGTTTGACCCTTTAATATATCAAGGTATGGCTGAGATGCATGACAGACACAGAGATATGCGCCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCATTAGAGGAGCGTATAGGAGATGTGAGCACTGGATTGAGTGAGGATGCCATTATGAAATTGATGAAACGGAGAAAATATGAATCTTCCATGACAAAGTCCTCACCGGATATTGAACCTTGCTGCATCTGCCAGGAGGATTATGCTGATGGTGAGGACCTTGGATCACTAGAGTGCGGGCATGACTTCCACTTGGACTGCATCAAGCAATGGTTAATGCAGAAGAACCTTTGTCCAATATGTAAAACGACAGCCTTAAACAGTGGCTAA 2175 0.4441 MPGERRTIGSFPEVFNISQGSSSRSSDMAQQTSSNDMFNPVDSRFPDYMITPHDPACENTEIPNLQSFNGTNAGESSSKLDFQSQVCDDRMKVEDCWPASFSARSGTSLRLEERQLASSDLSFSGRSNTHVCGNQLRRDHFQGSSSSQVPQNVNFSVGYLGSGANFVQGMNGEFDSCKSHGMEMDQTTSTGASFDHVGSSAGTSGFMVDEDSGESSSLGNLGSSCKRKALEGSSSHSCLGGSSSTLINAEDVAWANNLPSSSSMSTLSQNIPIFDSPVFQNPRARIATRGMASDSIPLPRIGRSSTNPLRNFGRRIDTGQHLEILPLNLSSTGTARNSNFSPPHHPSISEASSDALELRLTAGGATSGSDQIQSTATNATGLSANFQHFAWGGSSNAMADSVPNPHIPRERAVLEESNPRIGTRINSEHAFYVPVAEMRNSGNDSAWNVAAGGMSSSGGVPSTIWAGSSSNFNPFPAPTSVLPNNVPSHNQRLSDVTPWSLFPSIGSDPGVHNGHFSSLTAGPSSSSQDSVIPNRSNRQGHHQPYPRSSFSMERRGNGIPNASHSLRGLVADIEGRRRLISEIRQVLNAMRRGENLRAEDYMLFDPLIYQGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDAIMKLMKRRKYESSMTKSSPDIEPCCICQEDYADGEDLGSLECGHDFHLDCIKQWLMQKNLCPICKTTALNSG* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00132 724 MobiDBLite consensus disorder prediction 12 40 - -
Pte5g00132 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 721 IPR013083 -
Pte5g00132 724 MobiDBLite consensus disorder prediction 513 546 - -
Pte5g00132 724 SMART ring_2 676 716 IPR001841 -
Pte5g00132 724 MobiDBLite consensus disorder prediction 513 563 - -
Pte5g00132 724 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 222 721 IPR045191 GO:0061630
Pte5g00132 724 SUPERFAMILY RING/U-box 675 720 - -
Pte5g00132 724 ProSiteProfiles Zinc finger RING-type profile. 676 717 IPR001841 -
Pte5g00132 724 Pfam Ring finger domain 676 717 IPR001841 -
Pte5g00132 724 FunFam E3 ubiquitin-protein ligase MBR2 643 721 - -
Pte5g00132 724 MobiDBLite consensus disorder prediction 60 76 - -
Pte5g00132 724 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00132 Pte-Chr5 1534943 1540071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00132 1 723 C3H Transcription Factor Family AT2G15530 38.275 1.30e-122 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00132 - K19041 qsa:O6P43_011730 663.299