Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00131 ATGCCTGGGAGTTTAGAGCCGTTAGATTTGGTGGGGGTTCAGATTCCATACCACTTCAGGTGTCCGATCTCTTTAGAATTGATGCGAGACCCGGTTACGGTTTCGACAGGCCAAACCTATGACCGGTCCAGCATCGAGGCATGGGTCGCAACAGGGAACACGACTTGCCCTGTCACCCGGGCCCCGCTCAATGATTTCAATCTCATCCCCAACCATACCCTTCGCCGCCTCATTCAAGACTGGTGCGTTGCGAACCGGGCTTTGGGTATTGAACGGATTCCCACACCGAAACAACCTGCTGACCCAGCTTTGGTCCGGTCTTTGCTCAACCAAGCGTCCTCTCGCACCAGTCCTTATACGAGTCGTCTCTCAGCACTTCGGCGACTTAGAGGTCTCTCACGTGATTCGGACAAGAACCGTTCTATCATTGCTTCACATAACGCACGCGAACTCCTTCTGGATATCGTCTTCTCTAATACAGACTCAGAGTCGTCGCCGGAGTTGAACCACGAAGCACTGGGTGTTCTTGTCATGTTCCCTCTCACCGAATCTCAGTGCACTGCCGTGGCTTCAGACACGGAGAGAATCGCTTATCTATCGCGTCTTCTGTTCCATAGTTCTGATGAAGTCCGCATTAACTCGGCTGCGCTCATTGAAATCGTGGTGGCTGGAACTCGAGTACCGGAGCTCCGAGCACAAATCAGCAATGTCGATGAGATTTACGAAGGGGTGATGGACATTCTGAAGAGCCCATTATCTTATCCTCGTGCTCTCAAGGTTGGCATTAAGGTGTTGTTCGCTCTTTGCCTGGTGAAACAGACCCGGCACAAAGCGGTTGCAGCCGGAGCTGCATACACTTTGATAGACAGGTTGGCGGATTTTGAGAAATGCGATGCCGAGAGAGCGTTAGCGACGATCGAATTGTTGTGTAGAATTCAGTCTGGATGTGCTGCATTTGCAGAACACGCTTTGACAGTTCCTTTGTTGGTGAAGACGATACTGAAGATTTCTAATCGTGCGACGGAGTATGCCGCCGGAGCACTGGCGTCGTTGTGTTCATCGTCGGAGCATAGCCGGCGGGAGGCAGTGGCAGCCGGGATTCTGACTCAGTTGTTTTTGCTTGTACAGAGTGATTGCACGGAAAGAGCAAAGAGGAAAGCGCAACTGTTGCTAAAGCTACTTCGGGATTCGTGGCCTGACGTTTCTATCGGAAATTCCGATGATTTTGCTTGCAGTGAGGTTGGGGTGCCCTTCTGA 1257 0.5171 MPGSLEPLDLVGVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIEAWVATGNTTCPVTRAPLNDFNLIPNHTLRRLIQDWCVANRALGIERIPTPKQPADPALVRSLLNQASSRTSPYTSRLSALRRLRGLSRDSDKNRSIIASHNARELLLDIVFSNTDSESSPELNHEALGVLVMFPLTESQCTAVASDTERIAYLSRLLFHSSDEVRINSAALIEIVVAGTRVPELRAQISNVDEIYEGVMDILKSPLSYPRALKVGIKVLFALCLVKQTRHKAVAAGAAYTLIDRLADFEKCDAERALATIELLCRIQSGCAAFAEHALTVPLLVKTILKISNRATEYAAGALASLCSSSEHSRREAVAAGILTQLFLLVQSDCTERAKRKAQLLLKLLRDSWPDVSIGNSDDFACSEVGVPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00131 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 88 IPR013083 -
Pte5g00131 418 CDD RING-Ubox_PUB 16 68 IPR045210 -
Pte5g00131 418 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Pte5g00131 418 Pfam U-box domain 15 86 IPR003613 GO:0004842|GO:0016567
Pte5g00131 418 SUPERFAMILY RING/U-box 5 91 - -
Pte5g00131 418 Gene3D - 97 247 IPR011989 -
Pte5g00131 418 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Pte5g00131 418 FunFam RING-type E3 ubiquitin transferase 9 91 - -
Pte5g00131 418 Gene3D - 248 394 IPR011989 -
Pte5g00131 418 PANTHER WDSAM1 PROTEIN 13 399 IPR045185 GO:0061630
Pte5g00131 418 SUPERFAMILY ARM repeat 104 394 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00131 Pte-Chr5 1529639 1533490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00131 1 419 U-box Gene Family AT1G49780 66.745 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00131 - - zju:125424339 653.284