Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00128 ATGGCTCAACAAAGTAATGCTGGGGATCTGAATCAGCAGCAGCATCAACAGCAGCAGCAGTGGATACAGCAGCAACAACATCAACAACAATGGATGGCTATGCAGTATCCAGCTGCAGCCATGGCTATGATGCAGCAGCAGATGATGATGTACCCACAGCATTACGTGCCTTATGGGCACCACCCTTACCAGCCACCTCATTACCACCTTAAACCTCAGCAATATAAGCAACTATCGCCCGAGGATGTTAAGACGATCTGGGTCGGTGATCTTCATCATTGGATGGACGAGAACTACCTTCATAGTTGTTTCGCTCAAACAGGAGAGGTAGTTTCAGTAAAGGTTATACGAAATAAGCAAACAGGTGAGTCTGAGGGATATGGATTTGTAGAGTTCTATTCTCGCGTGACAGCTGAAAAAGTCTTACAGAACTATAGTGGTGCTCCAATGCCAAATACGGATCAACCCTTCCATTTGAACTGGGCTACCTTTAGTACTGGTGAACGGCGAACTGATGCAGGCTCCGATCTTTCTATATTTGTGGGGGACCTAGCTGGAGATGTGACTGATTCAATGCTGCAGGAAACCTTTTCCAGTAGATACTCATCTGTCAAGGCGGCAAAAGTAGTTGTTGATTCCAATACTGGTCGTTCAAAAGGTTACGGTTTTGTGAGATTTGGGGATGATAATGAAAGATCAAGGGCAATGACTGAAATGAATGGTGTCTTTTGTTCTAGTCGACCTATGCGGATAGGTGTTGCAACCCCCAAGAAATCATATGGAAATCCACAACAGTATTCTTCTCAAGCTGTTGTGTTGGCTGGTGGACATTCTTCAAATGGAGCTGTGGCAAATGGATCCCACTCTGAAGGGGATTCCAATAACACAACAGTGAGTTCCATTTTTCTCCCTCTCGTGGCTTCTGTTGCCTTGCAGTCACTAATCTACTCTTTACTGCAGATATTTGTTGGAGGCCTAGATTCTGACATCACCGATAAAGAACTAAGACAGCCATTTTTGCAATATGGTGATGTTGTTTCTGTGAAAATACCTGTGGGTAAAGGCTGTGGTTTTGTGCAATTTGCTGATAGAAAGAGTGCTGAGGAAGCTTTTGAAGGTTTAAATGGGACAGTCATCGGCAAGCAGACAGTTCGTCTTGCCTGGGGACGCACTCCAGCAAACAAGCATTGGAGAAGCAATTCTGGCAGCCAGTGGATGGGAAACTATGGACAAGGCAGTCGAGGTTATGCATATTCTGGGCCACAAAATCAGAATACTAGTGTGCAAGCTACATCTGCTACAGTTCAAGAGGCATCCTAA 1320 0.45 MAQQSNAGDLNQQQHQQQQQWIQQQQHQQQWMAMQYPAAAMAMMQQQMMMYPQHYVPYGHHPYQPPHYHLKPQQYKQLSPEDVKTIWVGDLHHWMDENYLHSCFAQTGEVVSVKVIRNKQTGESEGYGFVEFYSRVTAEKVLQNYSGAPMPNTDQPFHLNWATFSTGERRTDAGSDLSIFVGDLAGDVTDSMLQETFSSRYSSVKAAKVVVDSNTGRSKGYGFVRFGDDNERSRAMTEMNGVFCSSRPMRIGVATPKKSYGNPQQYSSQAVVLAGGHSSNGAVANGSHSEGDSNNTTVSSIFLPLVASVALQSLIYSLLQIFVGGLDSDITDKELRQPFLQYGDVVSVKIPVGKGCGFVQFADRKSAEEAFEGLNGTVIGKQTVRLAWGRTPANKHWRSNSGSQWMGNYGQGSRGYAYSGPQNQNTSVQATSATVQEAS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00128 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 164 IPR000504 GO:0003723
Pte5g00128 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Pte5g00128 439 FunFam Polyadenylate-binding protein RBP47B 165 267 - -
Pte5g00128 439 Gene3D - 315 425 IPR012677 -
Pte5g00128 439 SUPERFAMILY RNA-binding domain, RBD 319 418 IPR035979 GO:0003676
Pte5g00128 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 248 IPR000504 GO:0003723
Pte5g00128 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Pte5g00128 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 152 IPR000504 GO:0003723
Pte5g00128 439 CDD RRM2_SECp43_like 176 255 - -
Pte5g00128 439 CDD RRM1_SECp43_like 85 165 - -
Pte5g00128 439 MobiDBLite consensus disorder prediction 1 21 - -
Pte5g00128 439 MobiDBLite consensus disorder prediction 416 439 - -
Pte5g00128 439 SUPERFAMILY RNA-binding domain, RBD 49 166 IPR035979 GO:0003676
Pte5g00128 439 SMART rrm1_1 178 252 IPR000504 GO:0003723
Pte5g00128 439 SMART rrm1_1 320 387 IPR000504 GO:0003723
Pte5g00128 439 SMART rrm1_1 85 160 IPR000504 GO:0003723
Pte5g00128 439 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 72 395 - -
Pte5g00128 439 SUPERFAMILY RNA-binding domain, RBD 175 279 IPR035979 GO:0003676
Pte5g00128 439 Gene3D - 165 269 IPR012677 -
Pte5g00128 439 Gene3D - 83 163 IPR012677 -
Pte5g00128 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 391 IPR000504 GO:0003723
Pte5g00128 439 FunFam Polyadenylate-binding protein RBP47B 83 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00128 Pte-Chr5 1470100 1473913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00128 83 388 Eukaryotic Initiation Factors Gene Family AT2G23350 26.752 7.40e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00128 - - qsa:O6P43_031013 528.48