Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte5g00128 | ATGGCTCAACAAAGTAATGCTGGGGATCTGAATCAGCAGCAGCATCAACAGCAGCAGCAGTGGATACAGCAGCAACAACATCAACAACAATGGATGGCTATGCAGTATCCAGCTGCAGCCATGGCTATGATGCAGCAGCAGATGATGATGTACCCACAGCATTACGTGCCTTATGGGCACCACCCTTACCAGCCACCTCATTACCACCTTAAACCTCAGCAATATAAGCAACTATCGCCCGAGGATGTTAAGACGATCTGGGTCGGTGATCTTCATCATTGGATGGACGAGAACTACCTTCATAGTTGTTTCGCTCAAACAGGAGAGGTAGTTTCAGTAAAGGTTATACGAAATAAGCAAACAGGTGAGTCTGAGGGATATGGATTTGTAGAGTTCTATTCTCGCGTGACAGCTGAAAAAGTCTTACAGAACTATAGTGGTGCTCCAATGCCAAATACGGATCAACCCTTCCATTTGAACTGGGCTACCTTTAGTACTGGTGAACGGCGAACTGATGCAGGCTCCGATCTTTCTATATTTGTGGGGGACCTAGCTGGAGATGTGACTGATTCAATGCTGCAGGAAACCTTTTCCAGTAGATACTCATCTGTCAAGGCGGCAAAAGTAGTTGTTGATTCCAATACTGGTCGTTCAAAAGGTTACGGTTTTGTGAGATTTGGGGATGATAATGAAAGATCAAGGGCAATGACTGAAATGAATGGTGTCTTTTGTTCTAGTCGACCTATGCGGATAGGTGTTGCAACCCCCAAGAAATCATATGGAAATCCACAACAGTATTCTTCTCAAGCTGTTGTGTTGGCTGGTGGACATTCTTCAAATGGAGCTGTGGCAAATGGATCCCACTCTGAAGGGGATTCCAATAACACAACAGTGAGTTCCATTTTTCTCCCTCTCGTGGCTTCTGTTGCCTTGCAGTCACTAATCTACTCTTTACTGCAGATATTTGTTGGAGGCCTAGATTCTGACATCACCGATAAAGAACTAAGACAGCCATTTTTGCAATATGGTGATGTTGTTTCTGTGAAAATACCTGTGGGTAAAGGCTGTGGTTTTGTGCAATTTGCTGATAGAAAGAGTGCTGAGGAAGCTTTTGAAGGTTTAAATGGGACAGTCATCGGCAAGCAGACAGTTCGTCTTGCCTGGGGACGCACTCCAGCAAACAAGCATTGGAGAAGCAATTCTGGCAGCCAGTGGATGGGAAACTATGGACAAGGCAGTCGAGGTTATGCATATTCTGGGCCACAAAATCAGAATACTAGTGTGCAAGCTACATCTGCTACAGTTCAAGAGGCATCCTAA | 1320 | 0.45 | MAQQSNAGDLNQQQHQQQQQWIQQQQHQQQWMAMQYPAAAMAMMQQQMMMYPQHYVPYGHHPYQPPHYHLKPQQYKQLSPEDVKTIWVGDLHHWMDENYLHSCFAQTGEVVSVKVIRNKQTGESEGYGFVEFYSRVTAEKVLQNYSGAPMPNTDQPFHLNWATFSTGERRTDAGSDLSIFVGDLAGDVTDSMLQETFSSRYSSVKAAKVVVDSNTGRSKGYGFVRFGDDNERSRAMTEMNGVFCSSRPMRIGVATPKKSYGNPQQYSSQAVVLAGGHSSNGAVANGSHSEGDSNNTTVSSIFLPLVASVALQSLIYSLLQIFVGGLDSDITDKELRQPFLQYGDVVSVKIPVGKGCGFVQFADRKSAEEAFEGLNGTVIGKQTVRLAWGRTPANKHWRSNSGSQWMGNYGQGSRGYAYSGPQNQNTSVQATSATVQEAS* | 440 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte5g00128 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 84 | 164 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 177 | 256 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | FunFam | Polyadenylate-binding protein RBP47B | 165 | 267 | - | - | |
Pte5g00128 | 439 | Gene3D | - | 315 | 425 | IPR012677 | - | |
Pte5g00128 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 319 | 418 | IPR035979 | GO:0003676 | |
Pte5g00128 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 179 | 248 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 321 | 384 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 86 | 152 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | CDD | RRM2_SECp43_like | 176 | 255 | - | - | |
Pte5g00128 | 439 | CDD | RRM1_SECp43_like | 85 | 165 | - | - | |
Pte5g00128 | 439 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Pte5g00128 | 439 | MobiDBLite | consensus disorder prediction | 416 | 439 | - | - | |
Pte5g00128 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 49 | 166 | IPR035979 | GO:0003676 | |
Pte5g00128 | 439 | SMART | rrm1_1 | 178 | 252 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | SMART | rrm1_1 | 320 | 387 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | SMART | rrm1_1 | 85 | 160 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 72 | 395 | - | - | |
Pte5g00128 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 175 | 279 | IPR035979 | GO:0003676 | |
Pte5g00128 | 439 | Gene3D | - | 165 | 269 | IPR012677 | - | |
Pte5g00128 | 439 | Gene3D | - | 83 | 163 | IPR012677 | - | |
Pte5g00128 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 319 | 391 | IPR000504 | GO:0003723 | |
Pte5g00128 | 439 | FunFam | Polyadenylate-binding protein RBP47B | 83 | 163 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte5g00128 | Pte-Chr5 | 1470100 | 1473913 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte5g00128 | 83 | 388 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.752 | 7.40e-24 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte5g00128 | - | - | qsa:O6P43_031013 | 528.48 |