Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00091 ATGGCCAGTGCTGATGTTGAATACCGTTGCTTCGTCGGAGGGCTCGCATGGGCCACCGACAGCGAAGCTCTCACTAAAGCTTTTTCTCCTTATGGCGAAGTCATCGATTCGAAGATCGTCAACGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGATTCGTGACCTTTGCTTCTGAGGATGCCATGAGATCAGCAATTGAAGGAATGAACGGCTACCTTCTTGACGGTCGTAACATCACAGTGAACGAGGCTCAGTCTCGTGGAAGCGGTGGCGGAAGTGGATTCAACCGTGGTGGCGGCGGAGGTCGTGGTGGAGGTGGTTATGGAAATCGAAACGGTGGAAGCTATGGAGGCGGCCGAGGTTACAGTGGCGGCCGCGGTTACAGCAGTGGTGGCGGAGGTTACGGAGGAGGTGGTGGTTATGGAGGCGGTGGACGGGACCGTGGATATGGTGGCGATGGTGGCAATCGATTCTCAAGAGGCGGTGGTGACTCCGATGGCGGCTGGAGGAGTTGA 516 0.562 MASADVEYRCFVGGLAWATDSEALTKAFSPYGEVIDSKIVNDRETGRSRGFGFVTFASEDAMRSAIEGMNGYLLDGRNITVNEAQSRGSGGGSGFNRGGGGGRGGGGYGNRNGGSYGGGRGYSGGRGYSSGGGGYGGGGGYGGGGRDRGYGGDGGNRFSRGGGDSDGGWRS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00091 171 PANTHER GEO13361P1-RELATED 3 154 - -
Pte5g00091 171 MobiDBLite consensus disorder prediction 127 171 - -
Pte5g00091 171 Gene3D - 2 108 IPR012677 -
Pte5g00091 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pte5g00091 171 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pte5g00091 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pte5g00091 171 CDD RRM2_NsCP33_like 9 84 - -
Pte5g00091 171 MobiDBLite consensus disorder prediction 84 103 - -
Pte5g00091 171 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00091 Pte-Chr5 1115205 1116324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00091 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 40.278 2.27e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00091 - K13195 ccaj:109800369 149.443