Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00081 ATGGCTAAACCAAAAGCTCCAAGAAGAACCCTAGACTCCTACACTGTCAAACACATAAACAAAACCATTAGAGACGGAGATTGCGTTCTTATGAGGTCTTCTGAACCTTCTAAACCATCATATGTGGCGAGGGTCGAGCGGATCGAATCGGACTCGCGTGGAGCCAACGTCAAGATTCATGTCAGGTGGTATTACCGGCCGGAGGAGTCTATTGGTGGTCGACGGCAGTTTCATGGTTCCAAAGAGGTTTTCCTCTCCGATCACTATGATGTTCAGAGTGCTGATACCATTGAAGGGAAGTGTACTGTCCACAACTTCAAGAGCTATACAAAGCTTGACGCTGTTGGTAACGACGATTTCTTTTGCCGTTTTGAGTACAATTCGGCTACAGGAGCCTTTAATCCCGATAGAGTTGCAGTATATTGTAAATGTGAGATGCCTTACAACCCAGATGACTTAATGATTCAATGTGAAGGATGCAGTGATTGGTTTCATCCTGTTTGTATAGACATGACAGTGGAGGAAGCGAAAAGACTTGACCACTTCTTCTGTGAAAGCTGTTCTTCGGTAGGTCAAAATTTGGAAAATTCTCTTGCTCCTTCCAGACACACTGATACTAAGGTTGATACAAAACGCCGTAGAAGATTATAA 651 0.4378 MAKPKAPRRTLDSYTVKHINKTIRDGDCVLMRSSEPSKPSYVARVERIESDSRGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHYDVQSADTIEGKCTVHNFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMIQCEGCSDWFHPVCIDMTVEEAKRLDHFFCESCSSVGQNLENSLAPSRHTDTKVDTKRRRRL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00081 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Pte5g00081 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Pte5g00081 216 SMART PHD_3 141 188 IPR001965 -
Pte5g00081 216 Pfam PHD-finger 141 188 IPR019787 -
Pte5g00081 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Pte5g00081 216 PANTHER OS08G0421900 PROTEIN 5 207 - -
Pte5g00081 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Pte5g00081 216 FunFam Chromatin remodeling protein EBS 1 133 - -
Pte5g00081 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 204 IPR013083 -
Pte5g00081 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Pte5g00081 216 Gene3D - 2 133 IPR043151 -
Pte5g00081 216 SUPERFAMILY FYVE/PHD zinc finger 131 189 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00081 Pte-Chr5 1051603 1055216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00081 31 139 Core DNA Replication Machinery Family AT4G14700 28.440 1.20e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte5g00081 BAH 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00081 K25868 - gmx:100787968 404.831