Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00075 ATGAAGATCCAGTGTGATGTCTGCGACAAACAGGAGGCTTCTGTATTTTGTTCTTCTGATGAAGCTGCACTCTGCCATGGCTGTGATCATAGTATCCACCATGCCAACAAGCTTGCCAGCAAACACAAGCGCTTCTCACTTCTCCAACCTACTTGCAAAGAATCCCCACTTTGTGATATCTGTCAAGAAAGGCGTGCTTTTCTGTTTTGCCGAGAAGATAGAGCAATACTATGCAGAGAATGTGACATTCCCATCCATAAAGCCACTGAGCATACACAGAAACACAACAGGTTTCTTCTCACAGGTGTCAAGCTCTCTGATTGTTCTTTTACACATCAAACTTCATCTTCCTGTAGTGGAGCAAATGCTATTACTGACACTGAGGTAATTAGACGGTCAAACTCATCAGCAAAAAGCCGAAAATCAGTTTCCAATGAAGTCCTCAATTCAGCTTCAATGGTGAATTTTATGGCATCAGCTGGTTGCAGCGTTGAAGATATCATTGCCAGTGATACTGCTTCGGTTTCGACAAGCAGCATATCTGAGTACTTGATTGAAACCTTACCGGGTTGGTGCTTTGAAGACCTTCTCGATCCTCCATTTGGATCTCATGGTCTCTGTAAGAAAAATAACCATCAGTGTGCGTTGGAGGATGAATGTTCTGAAAACTGTACATTTTCGTTTCCATCAGACAACTTAACCTGCTGGGTACCTCAACTTCAACCCCAATCTTTTCAGATTAGCTCACAGATGACTCCCATGCATGGTTTTCTCAATGGAGTTGTGGAGGATGCACCGAAAAAAACAGCTGTAAAGAATAGCTGGAATTGGTTAGATGATGGTTTCACTGTCCCTCAAATGAGCCCTCTGTCCATTGAGAAACGCAGACGTTTTTAA 897 0.4292 MKIQCDVCDKQEASVFCSSDEAALCHGCDHSIHHANKLASKHKRFSLLQPTCKESPLCDICQERRAFLFCREDRAILCRECDIPIHKATEHTQKHNRFLLTGVKLSDCSFTHQTSSSCSGANAITDTEVIRRSNSSAKSRKSVSNEVLNSASMVNFMASAGCSVEDIIASDTASVSTSSISEYLIETLPGWCFEDLLDPPFGSHGLCKKNNHQCALEDECSENCTFSFPSDNLTCWVPQLQPQSFQISSQMTPMHGFLNGVVEDAPKKTAVKNSWNWLDDGFTVPQMSPLSIEKRRRF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00075 298 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pte5g00075 298 CDD Bbox1_BBX-like 5 47 - -
Pte5g00075 298 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pte5g00075 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte5g00075 298 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Pte5g00075 298 CDD Bbox1_BBX-like 57 100 - -
Pte5g00075 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte5g00075 298 FunFam B-box zinc finger protein 21 1 98 - -
Pte5g00075 298 Gene3D Classic Zinc Finger 1 98 - -
Pte5g00075 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00075 Pte-Chr5 1002419 1003756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00075 1 298 C2C2-CO-like Transcription Factor Family AT1G75540 45.181 4.54e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pte5g00075 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00075 - - qsa:O6P43_002026 325.094