Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00074 AGAAGCCGAACCAAAAGCCTCGTTTATTCATTCATTGCAGACATCACTGCCTCAGCCAACAAAACAAAGACAACCACACAAGTTTTCTTCATCTCTCATCTTCATATTTCATCAGAAATGGAGTGCGCGATAGCAAGAGCTTTCAAACCAAGTTTACGCAGAGAATTCGCGGTCATGAAGTCTTCCACCCACCAAGCTTTTTACGAAGAATTCGTGTCTTTGAACGCTAATAATGGCGTTCCTTGTGAGGATTTCTCTGTTGATGACTTGCTTGACTTCTCTAATGGTGAATTTCATGTTGGTAATGGACAGAGTACTGAACATGTTGACGAAGAAGAGGAAGAAAAACACAGTATATTCTCTTCTAACAGCTCTAACAGCTCTGGTGTTTGCGGTACCAACGAGTCTGACTCCATTTTTGCAAGCGGACTTGCAGTGCCGACTGATGATATAGAAGAATTGGAGTGGGTTTCTCACTTTGTGGATGACTGCGCACCAGAGCATTCACTTTTGTATCCAGTAACCATTTCAGAGCAAACGACAAAGACGGGCATAAGCTCCAGTACACCAGGGAAGAGACTGTCTGAAGTACCGAAGGCTCGACCGGACTTAACCCGCGGTCTTGCTTTTCCTTCATGGGTTCCGGTTGGACCGAGAAGCAAACGTCAAAGAACAAACCGCTCTCGGGTGTGGTCATTTGGGTCGTACTCACAAACAGACTTGTCGTCCTTTCCATCGTCATGCACTTACGAGTTTTTATCGATGCCGTATGTCATGTTAAACAAAACGGTCCAGAGCACGGATTCATTGAACCAGGTCAGCGAACCGGTTAAGAAGCGGAAGAAAAGGCTGGAGGTTAGTCAACCCAGAGGCTCAAGAAGTGGTGGGTCTCAAGTCCAGCGTAGGTGTACCCATTGCCAAGTGCAGAAGACTCCACAATGGCGAGCCGGCCCACTTGGACCTAAGACCCTTTGCAACGCTTGTGGAGTTCGTTACAAATCCGGCCGTCTATTTCCGGAGTACAGACCGGCCTGTAGTCCAACGTTCTCAAGTGAAATTCATTCCAACAGTCACCGTAGGGTGACTGAGATTAGGAAGAGGAACGAGATGAGTGGACGGCCGGAATCGGGTTTAAACCGAGCACAGATGATGATTCCGAGTTGCTAA 1167 0.4713 RSRTKSLVYSFIADITASANKTKTTTQVFFISHLHISSEMECAIARAFKPSLRREFAVMKSSTHQAFYEEFVSLNANNGVPCEDFSVDDLLDFSNGEFHVGNGQSTEHVDEEEEEKHSIFSSNSSNSSGVCGTNESDSIFASGLAVPTDDIEELEWVSHFVDDCAPEHSLLYPVTISEQTTKTGISSSTPGKRLSEVPKARPDLTRGLAFPSWVPVGPRSKRQRTNRSRVWSFGSYSQTDLSSFPSSCTYEFLSMPYVMLNKTVQSTDSLNQVSEPVKKRKKRLEVSQPRGSRSGGSQVQRRCTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSSEIHSNSHRRVTEIRKRNEMSGRPESGLNRAQMMIPSC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00074 388 Gene3D - 294 372 IPR013088 GO:0006355|GO:0008270
Pte5g00074 388 ProSiteProfiles GATA-type zinc finger domain profile. 297 333 IPR000679 GO:0006355|GO:0043565
Pte5g00074 388 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 299 360 - -
Pte5g00074 388 SMART GATA_3 297 351 IPR000679 GO:0006355|GO:0043565
Pte5g00074 388 FunFam GATA transcription factor 294 379 - -
Pte5g00074 388 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Pte5g00074 388 Pfam GATA zinc finger 303 336 IPR000679 GO:0006355|GO:0043565
Pte5g00074 388 PANTHER GATA TRANSCRIPTION FACTOR 74 381 - -
Pte5g00074 388 CDD ZnF_GATA 302 359 IPR000679 GO:0006355|GO:0043565
Pte5g00074 388 MobiDBLite consensus disorder prediction 104 119 - -
Pte5g00074 388 MobiDBLite consensus disorder prediction 103 131 - -
Pte5g00074 388 MobiDBLite consensus disorder prediction 268 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00074 Pte-Chr5 989336 990845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00074 84 365 C2C2-Gata Transcription Factor Family AT4G36240 40.426 6.96e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte5g00074 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00074 - - qsa:O6P43_011543 352.058