Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00071 ATGGAGACCGATGAAGAAGGAGTTTTTAGTAAACCGCAATCACTCGGAAACGACGATAGTAGCCCACTACCTGGTCGTAATGAATCCGACGAGCTACAATGCCAATGGGATTTGGACGAGGCGCGCCACGACGAGACGCACTTACCAGTTTCTGGCATAGATGACAATGATTTGGTTGCCGGAGAGGCCAGTGAGGATGTGGGTATGCGTGGAGGACAGGTACAAAGCGATGTACCGGAGAAAGACCAGATTTTGGGTGAAGTGGCAGAGATGAGGGAGGTAATACCTGTGGAGGAGGAGGAGGCAAGTGGTGGTGTTGAGAAGCAGGAGGTAAAGGTTGCGGATTTATCTGATGCGGGTGCGGAAACGACTGAGACAAGTGATGATGCGGGTGGTTGCGTTGATAATCAGGCGAAAGAGATTGAGAATTTGGATGACACGGAACAAAAGAGGGAAACTGTAGTTGGTGATAGCGTGGAGAATGATATGGTTGCGGCAGTTGGGGATGGGAATGCTTTCGCGGGGGAGAGCTCTATGTCAGTGCATGTCGGTTCAGTGGATAAGGTGGTTGAAGAAAAAGATTTAGATGAGGCAGTGACAGGAGTACTACATGTGGCTGAGGAGGAAGCAAAATTGGCTGAAACGGGGACGACATATGAGATGAAGGAATCTGCGGCAGAGCGCGGAGGTTCAATGGATATGACCGGTAAGATGATTGAAGAGAAAGATTTGGATGAGGCAGTGGTCGAAGTGCCTCATGTGGCTGAGGAGGGAGTAGATTTGGATAGAACTGCGGCTAAATATCAGACTGAGTGCTCACTGTCAGAGCATGTGGGTTCGACGGCTATGCTTGGTATTGTGGCCAAAGAAAAGGACTTGGATGATGCAGTGGTAGAAGTGCCTCAGATAACTGAAGAGGAAGTTAGTTTGGATGGAACTGCAACGAGAGATGTGATTGGAAGTGCTGTATCGTTGGATGTGGGTGGCATGGTATCTGAAGAGAAGGATTTGGATGCAGTAGTGGGGGAAGTGCTACATGTGGCAGCGGAAGAAGTTAATATAGGCGAAACTGTGATACAAAAGGATTGGGAGGTGATAGAAGCTGGAGTTGAAACGGCCAAGGACGATGAGTTGGCGAAGGCTGATGAGACAACTATTGACACCGGCGATGCAGGGCTAGATAGTTTGTCTAACATGGCATTGGAAGCTATTGAAAAGGACAGAATGGATTATGAGAGTGGCAAGGTGGGTCTAACCAACCAGGCTGATGATACAGCTATGGTAATGGAGAAGGAGGCGTACGAAGGAGCGGGGGATGCTGTACAGGTGAAAGAAGAGGTTAATAGGATGATGTCTGAGGATGCTCCAATGGAATCAGATGGTGGGGACACGGCTGTGGAAAACAATAATATTGTGGATAATGTGAAGATTATGAAGGTGAGTGTTGAATTTGACAGGGATGACATGTTGGAGGAGTCAGCTGAAGCGGAGGACATTGGTGCAGAAATAGAGGTGGCAAAGCAAGAGAATACGGTAGGGTTGGAGACTGCGGAGGCCGAAGAGGATGCTTATGGAAGTTGCATGGTGGAGGAGACCATGAAAGAGGATGATGCTGAGGTGGCATATGAAGTTGATTATATGGATGACGAAGCTGATACCGCTGATGTGATGGAAGAAACTATGGACGCTGAAGAAGTTGAGCCTACTGAGGAGTTAGAGGAACATATTAGAAGTAGTGCTAGTGGGAAGAGGAAGCGTGGGAGGAATTCCAAGGGTTCAGTAAAAGCGCTTTTGAAGAAAAAAACCGAAGAAGATGTGTGTTTCATATGCTTCGATGGAGGTGAACTTGTGCTCTGCGATCGCAGGGGATGCCCAAAAGCGTATCACCCTTCTTGTGTGAACCGTGATGAGGCGTTCTTTAGGTCCAAAGGCCGATGGAATTGTGGGTGGCACCTGTGCAGCAACTGTGAGAAGAATGCATATTATATGTGTTATACTTGTACCTTCTCCTTGTGCAAGGGTTGTGTCAAAGATGCTGTTGTCTTATGTGTTAGAGGAAACAAGGGGTTCTGCGAGACCTGCATGAGAACTATCATGTTAATAGAACAGAAGGAGCAAGGAAACAAGGACATGCAAGGACAGGTGAATTTTGATGACAAGAGTAGCTGGGAGTATCTTTTCAAGGATTACTGGATGAATTTGAAAAGCAGGCTATCTTTGACGCATGATGAACTAGCTCAAGCAAAAAATCCATGGAAAAGATCTGAACCACTCACTACTAAGGAATCTCATTGTGAACTTTATGATGCTAACAAGGATAGGGGTTCAGATTCAGATAGCTCCTGGGGAAACATTGAATTGAAAAGTTCTAGAAGAAGAAAGCCAAAGAAGAGGCTGAAATCTCGCACCAAAGATGGGGATTCACAAAGCACGGTGACTGGGGAAGGGCCATCTGGTGATGGCAGCAATGAGTGGGCATCTAAAGAGCTTTTGGAGTTTGTAATGCACATGCGAAATGGCGATACATCTCTCTTATCTCAATTTGATGTGCAAGCTCTCTTGCTAGAATACATAAAAAGAAATAAACTGAGAGATCCTAGGAGAAAGAGCCAAATTATTTGTGATGCAAGACTCCAGAATCTGTTTGTGAAACCCCGGGTGGGCCATTTTGAAATGTTAAAGCTGCTTGAATCTCACTTTCTTTTAAAGGAGGATTCACAGGTTGAGGACTTGCAAGAAACTGTTGTTGATACGGAGGCTAGTCAGTTGGAAGGGGATCGGAATTCTGAATCATTCACAAAGGCAGTCAAGGATAAGAAAAGAAAAACGCGAAAAAAGAGTGATGATAGGAGCCTACAGTCAAATCTTGACGATTATGCTGCAGTAGATACTCACAATATAAATTTAATTTACTTGAAACGTAAGCTGGCTGAAGATTTAATTGAGAATGCAGAAACATTTCATGACAAAGTTGTTGGGTCCTTTGCAAGGATAAGGATTTCTGCAGGTGGTCAGAAGCAAGACTTATATAGACTGGTTCAAGTTGTTGGTACATGCAAAGGTACTGAGCCCTATAAACTTGGTAAAATGATGACAGATACCTTACTGGAAATTTTAAATTTGAACAAGAAAGAAGTTATATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGGCTTCGCCAGAGTATTAAATGTGGTCTGATAAACAGGCTGACTGTGGGTGATATCCGGGAGAAAGCAATGGCTCTCCAGGAAGTTAGAGTAAAAGATTGGTTGGAGGCCGAGATATTGCGGGTTAGTCATCTCCGAGATAGAGCTAGTGATATGGGGCGTAGGAAGGAATATCCTTTACTTAAAAGTGCAAAATTGCAAATGCTGAAAGCACCAGAGGAGCGGCAGCGTAGACTAGAGGAAATTCCAGAGATCCATGCAGACCCAAATATGGATCCAAGTCATGAGTCCGAAGAAGATGAAATCAGACAAGAAAATAACTTGAAACCTAGGGCTAGTGGATTTAGCAGGAGAAGAGAGCCAATTTCTCCTCAGAAAAGTAGTGGTCCTCAGAGTGATTCTTGGAATGGTACTAGAAACCATTCTAATGCAAACAGGGAACTCAACAGGAGCATGTCTAACAAGGGTTTCTCTAGAGATGTTACTGATACGACTAGCACCAGTGATATGGGGCATGATAGTCCATGGAAGCAAGGAAGAGACATTGACAAAGAATCCCATTTGTCAAGTAGGTGGGACAAGCCAAAACTTTCATCAAGTGCAGAAATCAGTTCTAGAAGTAACAGGCCTGTTGTGATGTCTGGACCTTTTCCTTCGGTCAGTGAAGGTTCATCATCTAATGCGGGAGTACCTGCTCCCAAAATAAATGAAACGGAGAAAATGTGGAATTATAAGGATCCCTCTGGAAAAATCCAGGGACCATTTTCCATGGTACAGCTTCGCAAATGGAGTAATACTGGATATTTTCCTGCAGATTTAGGAATTTGGAAATCCAGTGAAACCCTAGAAGATTCGATATTATTAACAGATGCATTGGCTGGAAAGTTCCGGAAAGAACCATCTTTGATGTTGAAAAATAAAAGCGTCCACAATTATCATCAATCCTCCTCATATACTGGAAAGCCTCTACAAAATGTCGAAGCCCAACTTGCTGAAAGATCTCACCTAGTTCAAAGTGGCGAATCTTGGAATTCCCATGGTGGCTCTCCAGGTCGTCCTGTTTTGGAAAGTAAGAGCCCTAAGGATGATTACAGTCTGTTGGCCGGCAAGCCTGCCTCATTATATGTTGAGGTCCCTAAGAATTCAACCAATCAATGGGGCACTGACCATGTTAGAAAAAGTGAATTGATGAACCTTCCTTCCCCTACCCCACAAAGCACAACTGGTGGGGCTAAAGCTCAAGCTTTTGAAAATAAACGGGGATGCAGTTCTGGTCAGTCATCTGCTTCTGTATTAGGAATGAGCGCATTAACAGGAGTTGCTAATGGTCTGCAATCTCCTTCTGCTGTCATCCCAGATTCAGCAGGTCAGGGTTCCGGAAATGCTTCCTTAAATTCACTTCCTACGGCCCCAGTTTCCACTCCTTTTCTAGCAACTACCTCGTTGAACCCGGCTCTTGTACAAAACTTGGTCCAATCAATGAGTAACTATAATACACAAGCTGAAACTAAAGGATGGGGATCTCCTCTGGTTTCAAAATCTGAATTAGCAGCATCCATACATGGAGGTGAATCTAAAGCCTGGGTAAATGCCCCTCCACAGAGAATAGAACAACATAATGCCGCTGTTACTCCTGCTCAATGGGGTAATACTACATCCGTCCAGAATCCCAACTTTAACGCAGGGAATGCCACTGGGACCTATTCTGCAGCCAGCTTCCCAGGGATGACCAGTGCTGAGACTTGGAGACAGACTGATTCGGTTAGTCAATCAAACGGTCAGCCTACTGGTGCTACTAACCCACAATGGGGTGTGGGTGTTGCTAATAATCAAAGTGGTGTTCCGAGACCAATCCCAGAAAATCACAATATGTCTTGGGGAGTGATGCAAGGAAATCAAAATATGGGGTGGGCAGGACAAGTACCCACTAATACAAATGCAAATTGGTTACCTGGTCAGTTGCCAGCCTCTGGCAATGTAAACCCAGGATGGACTGCTCCAATGCAAGGATCATCAGCAGTAGGTGCAGTGCCTGGTCGGACTGGACCGACGCAAGGGCAGCCACAGATGAGTGCAAATCAAGGCTGGGTAGCTCCCGGTCAAGGGCCACCACCTGCAAACACGAATTCTGGCTGGAATCCCCCATCAACAAATCCAAACATGTGGGGTGCTGAGCAAAGTCACGGTGGAAACAGATATATGAGTACTGGAGATCGTGGCCCACACGGTGGTGATTCTGGTTATAGTGGAAGTCAACCTTGGAACAGGCAGTCATCATTTAACGGTGGAGGTAGTGGAGGTCCTGGCAGGCCTCCTTTCAGAGGTCAGAGAGTTTGCAAATATCATGAGAGTGGCCATTGCAAGAAAGGAGCTTCCTGTGATTACTTTCATAATTAA 5586 0.4524 METDEEGVFSKPQSLGNDDSSPLPGRNESDELQCQWDLDEARHDETHLPVSGIDDNDLVAGEASEDVGMRGGQVQSDVPEKDQILGEVAEMREVIPVEEEEASGGVEKQEVKVADLSDAGAETTETSDDAGGCVDNQAKEIENLDDTEQKRETVVGDSVENDMVAAVGDGNAFAGESSMSVHVGSVDKVVEEKDLDEAVTGVLHVAEEEAKLAETGTTYEMKESAAERGGSMDMTGKMIEEKDLDEAVVEVPHVAEEGVDLDRTAAKYQTECSLSEHVGSTAMLGIVAKEKDLDDAVVEVPQITEEEVSLDGTATRDVIGSAVSLDVGGMVSEEKDLDAVVGEVLHVAAEEVNIGETVIQKDWEVIEAGVETAKDDELAKADETTIDTGDAGLDSLSNMALEAIEKDRMDYESGKVGLTNQADDTAMVMEKEAYEGAGDAVQVKEEVNRMMSEDAPMESDGGDTAVENNNIVDNVKIMKVSVEFDRDDMLEESAEAEDIGAEIEVAKQENTVGLETAEAEEDAYGSCMVEETMKEDDAEVAYEVDYMDDEADTADVMEETMDAEEVEPTEELEEHIRSSASGKRKRGRNSKGSVKALLKKKTEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGRWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCVKDAVVLCVRGNKGFCETCMRTIMLIEQKEQGNKDMQGQVNFDDKSSWEYLFKDYWMNLKSRLSLTHDELAQAKNPWKRSEPLTTKESHCELYDANKDRGSDSDSSWGNIELKSSRRRKPKKRLKSRTKDGDSQSTVTGEGPSGDGSNEWASKELLEFVMHMRNGDTSLLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFVKPRVGHFEMLKLLESHFLLKEDSQVEDLQETVVDTEASQLEGDRNSESFTKAVKDKKRKTRKKSDDRSLQSNLDDYAAVDTHNINLIYLKRKLAEDLIENAETFHDKVVGSFARIRISAGGQKQDLYRLVQVVGTCKGTEPYKLGKMMTDTLLEILNLNKKEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIREKAMALQEVRVKDWLEAEILRVSHLRDRASDMGRRKEYPLLKSAKLQMLKAPEERQRRLEEIPEIHADPNMDPSHESEEDEIRQENNLKPRASGFSRRREPISPQKSSGPQSDSWNGTRNHSNANRELNRSMSNKGFSRDVTDTTSTSDMGHDSPWKQGRDIDKESHLSSRWDKPKLSSSAEISSRSNRPVVMSGPFPSVSEGSSSNAGVPAPKINETEKMWNYKDPSGKIQGPFSMVQLRKWSNTGYFPADLGIWKSSETLEDSILLTDALAGKFRKEPSLMLKNKSVHNYHQSSSYTGKPLQNVEAQLAERSHLVQSGESWNSHGGSPGRPVLESKSPKDDYSLLAGKPASLYVEVPKNSTNQWGTDHVRKSELMNLPSPTPQSTTGGAKAQAFENKRGCSSGQSSASVLGMSALTGVANGLQSPSAVIPDSAGQGSGNASLNSLPTAPVSTPFLATTSLNPALVQNLVQSMSNYNTQAETKGWGSPLVSKSELAASIHGGESKAWVNAPPQRIEQHNAAVTPAQWGNTTSVQNPNFNAGNATGTYSAASFPGMTSAETWRQTDSVSQSNGQPTGATNPQWGVGVANNQSGVPRPIPENHNMSWGVMQGNQNMGWAGQVPTNTNANWLPGQLPASGNVNPGWTAPMQGSSAVGAVPGRTGPTQGQPQMSANQGWVAPGQGPPPANTNSGWNPPSTNPNMWGAEQSHGGNRYMSTGDRGPHGGDSGYSGSQPWNRQSSFNGGGSGGPGRPPFRGQRVCKYHESGHCKKGASCDYFHN* 1862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1183 1236 - -
Pte5g00071 1861 FunFam Zinc finger CCCH domain-containing protein 19 962 1091 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1707 1731 - -
Pte5g00071 1861 SUPERFAMILY Plus3-like 962 1091 IPR036128 GO:0003677
Pte5g00071 1861 SUPERFAMILY GYF domain 1293 1355 IPR035445 -
Pte5g00071 1861 Gene3D SWIB/MDM2 domain 817 909 IPR036885 -
Pte5g00071 1861 Pfam Plus-3 domain 966 1069 IPR004343 GO:0003677
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1145 1179 - -
Pte5g00071 1861 ProSiteProfiles GYF domain profile. 1302 1356 IPR003169 GO:0005515
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1707 1840 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1745 1759 - -
Pte5g00071 1861 ProSiteProfiles SWIB/MDM2 domain profile. 819 902 IPR003121 -
Pte5g00071 1861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 697 IPR013083 -
Pte5g00071 1861 SMART swib_2 834 905 IPR019835 -
Pte5g00071 1861 Pfam GYF domain 1305 1343 IPR003169 GO:0005515
Pte5g00071 1861 Gene3D - 962 1092 IPR036128 GO:0003677
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1237 1255 - -
Pte5g00071 1861 SMART gyf_5 1303 1358 IPR003169 GO:0005515
Pte5g00071 1861 MobiDBLite consensus disorder prediction 562 588 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 13 28 - -
Pte5g00071 1861 ProSiteProfiles Zinc finger PHD-type profile. 604 670 IPR019787 -
Pte5g00071 1861 CDD Bbox1 652 678 - -
Pte5g00071 1861 SMART rtf1 961 1071 IPR004343 GO:0003677
Pte5g00071 1861 MobiDBLite consensus disorder prediction 32 51 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 769 823 - -
Pte5g00071 1861 SMART PHD_3 606 652 IPR001965 -
Pte5g00071 1861 CDD SWIB-MDM2_like 825 900 - -
Pte5g00071 1861 CDD PHD5_NSD 606 651 - -
Pte5g00071 1861 ProSitePatterns Zinc finger PHD-type signature. 607 667 IPR019786 -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1811 1827 - -
Pte5g00071 1861 SUPERFAMILY FYVE/PHD zinc finger 603 656 IPR011011 -
Pte5g00071 1861 ProSiteProfiles Zinc finger C3H1-type profile. 1836 1861 IPR000571 GO:0046872
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1648 1681 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1766 1796 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1145 1295 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1256 1295 - -
Pte5g00071 1861 FunFam Zinc finger CCCH domain-containing protein 19 596 696 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 806 820 - -
Pte5g00071 1861 Gene3D - 1303 1361 IPR035445 -
Pte5g00071 1861 CDD GYF 1302 1357 IPR003169 GO:0005515
Pte5g00071 1861 ProSiteProfiles Plus3 domain profile. 961 1094 IPR004343 GO:0003677
Pte5g00071 1861 Pfam SWIB/MDM2 domain 827 900 IPR003121 -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1 80 - -
Pte5g00071 1861 FunFam Zinc finger CCCH domain-containing protein 19 812 907 - -
Pte5g00071 1861 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 524 1861 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 1400 1426 - -
Pte5g00071 1861 MobiDBLite consensus disorder prediction 919 950 - -
Pte5g00071 1861 SUPERFAMILY SWIB/MDM2 domain 824 901 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00071 Pte-Chr5 965514 975747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00071 604 691 PHD Transcription Factor Family AT5G36670 34.000 1.42e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pte5g00071 Plus-3 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00071 - - qsa:O6P43_031598 1587.01