Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00063 ATGGCAGGTTTTAGTGGCGATGAGACTGCTCCCTTCTTCGGCTTTCTTGGAGCAGCCGCAGCTTTAGTTTTTTCCTGTATGGGAGCTGCCTATGGCACGGCAAAGAGTGGTGTTGGAGTGGCTTCAATGGGTGTGATGAGGCCTGAGTTGGTGATGAAATCTATTGTTCCAGTTGTTATGGCCGGTGTCTTGGGTATTTATGGACTTATTATTGCCGTTATCATCAGTACTGGGATCAACCCAAAGGCTAAATCTTATTACCTCTTCGATGGTTATGCTCATCTCTCTTCTGGGCTTGCTTGTGGTCTTGCTGGACTCTCTGCTGGTATGGCCATCGGTATTGTTGGCGACGCTGGCGTGAGGTATGACGTTTCATTCATTGACATCGAGAGCTGTTATTTAACTTTGACAGGGAACTTGAGATCACATTCCTTTTTTTTTCTTTTAAAAAAGTGTTTTGTTGGAGAGAAGTTTGCAGCATAA 483 0.4493 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYDVSFIDIESCYLTLTGNLRSHSFFFLLKKCFVGEKFAA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00063 160 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
Pte5g00063 160 FunFam V-type proton ATPase proteolipid subunit 10 132 - -
Pte5g00063 160 Gene3D - 10 127 IPR035921 -
Pte5g00063 160 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pte5g00063 160 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Pte5g00063 160 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Pte5g00063 160 SUPERFAMILY F1F0 ATP synthase subunit C 86 121 IPR035921 -
Pte5g00063 160 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte5g00063 160 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte5g00063 160 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte5g00063 160 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00063 Pte-Chr5 918822 921057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00063 2 155 Primary Pumps ATPases(2) AT1G75630 79.394 6.10e-80 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00063 K02155 - qsa:O6P43_011533 216.083