Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00053 ATGCCAGCTCTGTATGCAGCGAGGGTTTTCCAACTCACCAGAGAATTGGGACATAAGATGGACGGAGAAACCATTCAGTGGCTCTTACAGCAGGCGGAGCCTGCTATCATTGCTGCCACCGATACCAGAACCATACCTGCCTCTGCCATGGCAGAAGTTGGGCTCTCTGTTTCTGAACTGGGTAACTCTGTTTCGATAGGCATGATTTGCAATTCTGGTTATTTGGCTTCCAACTTGGGTGTCGACCCCAATCATGTATTGACCCGATTTGGGTTCCATGGATTTGAGTTCCCACATATCAACGTGGGTCCGATGAGTTTCTCCACAAACTTGAATGCGAATGTGACTAGGAACGACCAGCAAGTTCCGGGTTTAGAGCTTGGACTTTTGCAGGATGGTCATGTGAGGATGCTGAGCTCGGAAACCATGTCATCTGTACCATAA 444 0.4865 MPALYAARVFQLTRELGHKMDGETIQWLLQQAEPAIIAATDTRTIPASAMAEVGLSVSELGNSVSIGMICNSGYLASNLGVDPNHVLTRFGFHGFEFPHINVGPMSFSTNLNANVTRNDQQVPGLELGLLQDGHVRMLSSETMSSVP* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00053 147 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 55 IPR005333 GO:0003700
Pte5g00053 147 Pfam TCP family transcription factor 1 80 IPR017887 -
Pte5g00053 147 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00053 Pte-Chr5 868485 869270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00053 1 146 TCP Transcription Factor Family AT3G27010 43.316 3.61e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte5g00053 TCP 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00053 - - qsa:O6P43_030623 181.03