Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00044 ATGAGTTCTAAGGTTTCTGGAAAGGTGCAGTGGTTCGATACCCAGAAGGGTTATGGATTCATTACCCCAGACGATGGGGGGGAACAGGTCTTTGTTCACCAGTCCTCTATCCGAACGGAAGGTTTCCGTAGCCTTGGTGAAGGTGAGTCCATCGAGTATGTGATCGAATCGGACCCTCAAGGTCGGTCTAAGGCCACGGATGTTACTGGCCCAGATGAGTCCCAGGTTCAAGGGAGTCGCCGTGGCAGTGGCCCAGATGGTGGAGGTAGGGGTGGACGTGGTGGGTATGGCGGTGGAAGAGGTGGTTACGGTGGTGGGGGTGGCTATGGAGGCAGTGGTGGTTCGGGTTGTTTCACGTGCGGCGAAACTGGCCACATGGCTAGGGACTGCTCCCAAGGTGGCGGCGGAAGGTATGGAAGTGGTGGCGGGGGTGGACAATGCTATACTTGTGGTGGGTCTGGGCATTTCGCTAGAGAATGCACTGGTAACTCTCGTTGA 498 0.5643 MSSKVSGKVQWFDTQKGYGFITPDDGGEQVFVHQSSIRTEGFRSLGEGESIEYVIESDPQGRSKATDVTGPDESQVQGSRRGSGPDGGGRGGRGGYGGGRGGYGGGGGYGGSGGSGCFTCGETGHMARDCSQGGGGRYGSGGGGGQCYTCGGSGHFARECTGNSR* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00044 165 Pfam Zinc knuckle 146 161 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 Pfam Zinc knuckle 116 132 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 SMART csp_8 6 71 IPR011129 GO:0003676
Pte5g00044 165 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 162 - -
Pte5g00044 165 ProSiteProfiles Zinc finger CCHC-type profile. 147 160 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 SUPERFAMILY Retrovirus zinc finger-like domains 109 163 IPR036875 GO:0003676|GO:0008270
Pte5g00044 165 MobiDBLite consensus disorder prediction 62 81 - -
Pte5g00044 165 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Pte5g00044 165 ProSiteProfiles Zinc finger CCHC-type profile. 117 132 IPR001878 GO:0003676|GO:0008270
Pte5g00044 165 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Pte5g00044 165 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pte5g00044 165 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pte5g00044 165 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pte5g00044 165 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Pte5g00044 165 Gene3D - 113 165 - -
Pte5g00044 165 MobiDBLite consensus disorder prediction 55 105 - -
Pte5g00044 165 Gene3D - 1 83 IPR012340 -
Pte5g00044 165 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00044 Pte-Chr5 829889 830386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte5g00044 CSD 3e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00044 - - mof:131155331 153.68