Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00038 ATGGGAAGGTCTCCTTGCTGTGAAAAAGCTCATACAAACAAAGGTGCATGGACTAAAGAGGAGGATGATAGGCTTGTTGCTTATATCAGGGCTCACGGTGAGGGCTGCTGGAGGTCTCTACCAAAAGCAGCTGGTCTTCTCAGGTGTGGCAAAAGTTGCAGACTTCGCTGGATCAACTATCTCAGACCTGACCTCAAACGTGGCAATTTCACAGAAGAAGAAGATGAGCTCATTATTAAACTCCACAGTCTCCTCGGCAACAAGTGGTCTCTCATAGCAGGGAGATTGCCTGGGAGAACAGATAACGAGATAAAGAATTACTGGAATACCCATATAAGAAGGAAGCTTCTGAATAGAGGAATGGACCCTGCAACGCACAGGCCTCTGAACGAGGCTGTTTCTCAGAGTCAAGAAGCTGCCAGCACAATATCTTTCACTGCTTCTACTTCTATACCTAAACAAGAAGTCAGTCACGTCCATGAGTTTAGCGGGTCGGCTAAGGATGATTCAAAGAAGGCAGTGAAAGAACGATGCCCTGACTTGAACCTTGAGCTCAGAATCAGCCCTCCCCATCCAAATCAGCTTAATCAGCCTTGGAAGACTGGAGGGAGAAACCGTTGCTTTCCTTGCAGTTTGGGATTGCAGAACAGTAAGGACTGCAGCTGTGGATTGGGTCATGATGTGGGTGATAGCAGTGGCAGTGGCAGTGGCAGTGGCAGTATAGGTTATGATTTCTTGGGCTCGAAAAATGGAAGCATTTTGGATTACAGAAGCTTGGAAATGAAGTGA 789 0.4689 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGMDPATHRPLNEAVSQSQEAASTISFTASTSIPKQEVSHVHEFSGSAKDDSKKAVKERCPDLNLELRISPPHPNQLNQPWKTGGRNRCFPCSLGLQNSKDCSCGLGHDVGDSSGSGSGSGSIGYDFLGSKNGSILDYRSLEMK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00038 262 CDD SANT 69 112 IPR001005 -
Pte5g00038 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte5g00038 262 SMART sant 66 114 IPR001005 -
Pte5g00038 262 SMART sant 13 63 IPR001005 -
Pte5g00038 262 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pte5g00038 262 CDD SANT 16 61 IPR001005 -
Pte5g00038 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte5g00038 262 FunFam Myb transcription factor 68 137 - -
Pte5g00038 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 160 - -
Pte5g00038 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte5g00038 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte5g00038 262 Gene3D - 14 66 - -
Pte5g00038 262 FunFam MYB-related transcription factor 13 66 - -
Pte5g00038 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte5g00038 262 Gene3D - 69 142 - -
Pte5g00038 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00038 Pte-Chr5 790889 791838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00038 1 263 MYB Transcription Factor Family AT4G38620 63.889 3.49e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g00038 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00038 K09422 - tcc:18607558 387.882