Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00016 ATGGCATTTCGAAGTGACATTCAGAGGCAGCGCAGTGGAGTTAGTATTGTTGACGATGACAAGCAATTAATGTCTAAGGACAATTCGACCAAAGCAACTGTTGCTGATGCTCATTCTGATTACTCACAGTCACTTCCACACATGCTGAAGGATGGTAATAGTAATACTTTGAACTGCTATAAGGCAATGGGAAGAGGAGGATCGATGACTGCCGTCAGGCGCTCTAGTGAAGGTCGAAGCAGCTTCAGGAACTCATCGGAGAGATCTCTAGGAACGCTACAGGAATATTCAACAAGGACATCAGAGGACTCAAATTATGGGTCGGAGTCATCAGCATCAGGAGCGCTCCCGAGGGTATCTCAAGAGCTCAAGGCTGCTTTGGCCACGTTGCAACAGACTTTCGTTGTCTCCGACGCTACCAAACCAGACTGCCCTATCCTCTTTGCCAGTAGTGGATTTTTCAACATGACCGGTTATTCTTCAAAGGAGGTTATTGGAAGGAACTGCCGATTTCTCCAGGGCAAAGGCACAGACCAAAACGAAGTTGCCAAGATACGAGATGCAGTCAGAAACGGCACAAGCTACTGTGGAAGGCTCCTTAACTACAAGAAAGATGGGACACCTTTCTGGAATCTTCTCACCGTCACCCCCATCAAGGATGACAATGGCAACACCATCAAATTCATCGGAATGCAGGTTGAGGTGAGTAAATATACAGAAGGCTTGGTTGATAAGGCAGTAAGACCTAACGGGTTGCCCAAGTCACTCATCCGCTATGATGCTCGTCAGAAAGAGAAGGCATTGGATTCCATCACAGAGGTGGTCCAGACTGTTAAACACCCGAAATCTCATATTCGGCCTACCAGTAATGATATTACCAGTAAGCATGACGAGCATGAGAAACACAATCTTGACTTTGTTCTGCCCAAGTCTACTCAAGGGGACATGATTGCTCCGTCGACGTTCGATCCAACTTCTAAATTGCAGTATCCTGCTCTAGGGGTGGGATATGGATCGCCTGCCAACAACGTTAAGGACATTGAAAGGAAATCCAGAAACTCAGAACGCATTTCTTTTATGGGGTTTAAAGGGAGATCTCTTAGTTCTACAAGCGGGAAGGACCAGAAACAACTTATTCAACCTGAGACTCTGATGACCAAAGCCATAGAACGCTCTCACAGTTGGGAGCATGGTGAAAGAGAAAGAGACATACGTCAAGGAATTGATTTAGCTACCACATTGGAGCGCATAGAGAAAAATTTCGTGATCACTGATCCGAGACTCCCCGATAATCCAATTATCTTTGCATCTGATAGCTTTCTTGAGTTGACTGAATACACACGAGAAGAAATTTTGGGAAGGAACTGCAGATTCCTTCAAGGACCAGAAACAGACCAAGCAACTGTATCAAAGATTAGGGATGCTATCAGGGAACAAAGGGAAATTACTGTTCAGCTGATCAATTTCACCAAGAGTGGAAAAAAATTTTGGAATTTATTCCACTTGCAACCCATGCGTGACCAAAAGGGTGAACTTCAGTACTTCATTGGTGTTCAGCTGGATGGAAGTGATCATGTAGAACCCCTGCAGAACCGCCTGTCTGATACAACAGAGCAACAAAGTGCTAAATTGGTGAAAGCCACTGCAGAAAATGTCGATGAAGCTGTGCGAGAACTTCCTGATGCCAACTCGAGGCCAGAAGATTTATGGTCAATGCATTCATTGCCTGTCTTTCCAAGACCACACAAAAGGGATAGTCCTTCTTGGCTAGCAATACAGGAGATTAAAGCTCGAGATGCACAAATTGGCCTACATCATTTCAAGCCCATAAAGCCACTTGGTTGTGGAGATACTGGCAGTGTTCACTTGGTGGAACTTCATGAAACTGGTGAACTGTTTGCAATGAAGGCAATGGACAAGTCTGTCATGCTGAATCGTAACAAGGTGCACCGAGCTTGTGTTGAAAGGGAAATCCTATCTCTACTGGATCATCCTTTTCTTCCAACCTTATACACATCGTTTCAGACATCCACGCACGTTTGTTTGATAACAGACTTCTGTCCTGGTGGAGAACTATTTGCCTTGCTAGATAAGCAGCCCATGAAAGCATTCAAAGAAGAATCAGCGAGATTCTATGCAGCAGAGGTAGTTATTGGGTTGGAGTACTTGCATTGTTTAGGAATAATTTATCGTGACTTGAAGCCAGAAAATATCTTACTTCAGAAGGATGGGCATGTTGTATTGACTGACTTTGACTTATCTTTCATGACTTCCTGCAAACCGCAAATTCTTAAGTATCCGGTGCCTAGAAATCGGAAATCGAGAACTGAAACACCACCAACATTTGTTGCTGAGCCGGTTTCACACTCAAATTCATTTGTTGGAACTGAAGAATACATTGCTCCTGAAATTATCACTGGTGCTGGCCATAGTAGTGCTATTGATTGGTGGGCCCTTGGTATCTTGTTGTATGAGATGCTGTATGGGCGTACTCCTTTTAGGGGGAAAAACAGGCAGAAGACATTTGCAAACATCTTGCACAAGGATCTTACTTTTCCAAGTAGCATTCAGTCTCCAGCGTAA 2583 0.4429 MAFRSDIQRQRSGVSIVDDDKQLMSKDNSTKATVADAHSDYSQSLPHMLKDGNSNTLNCYKAMGRGGSMTAVRRSSEGRSSFRNSSERSLGTLQEYSTRTSEDSNYGSESSASGALPRVSQELKAALATLQQTFVVSDATKPDCPILFASSGFFNMTGYSSKEVIGRNCRFLQGKGTDQNEVAKIRDAVRNGTSYCGRLLNYKKDGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGLVDKAVRPNGLPKSLIRYDARQKEKALDSITEVVQTVKHPKSHIRPTSNDITSKHDEHEKHNLDFVLPKSTQGDMIAPSTFDPTSKLQYPALGVGYGSPANNVKDIERKSRNSERISFMGFKGRSLSSTSGKDQKQLIQPETLMTKAIERSHSWEHGERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKIRDAIREQREITVQLINFTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLQNRLSDTTEQQSAKLVKATAENVDEAVRELPDANSRPEDLWSMHSLPVFPRPHKRDSPSWLAIQEIKARDAQIGLHHFKPIKPLGCGDTGSVHLVELHETGELFAMKAMDKSVMLNRNKVHRACVEREILSLLDHPFLPTLYTSFQTSTHVCLITDFCPGGELFALLDKQPMKAFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTSCKPQILKYPVPRNRKSRTETPPTFVAEPVSHSNSFVGTEEYIAPEIITGAGHSSAIDWWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIQSPA* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00016 860 FunFam LOV domain-containing protein 395 559 - -
Pte5g00016 860 NCBIfam PAS domain S-box protein 431 524 IPR000014 -
Pte5g00016 860 NCBIfam PAS domain S-box protein 145 236 IPR000014 -
Pte5g00016 860 CDD PAS 421 521 IPR000014 -
Pte5g00016 860 Gene3D PAS domain 395 559 - -
Pte5g00016 860 SMART pas_2 408 477 IPR000014 -
Pte5g00016 860 SMART pas_2 121 190 IPR000014 -
Pte5g00016 860 ProSiteProfiles PAS repeat profile. 406 479 IPR000014 -
Pte5g00016 860 ProSitePatterns Protein kinases ATP-binding region signature. 613 636 IPR017441 GO:0005524
Pte5g00016 860 SMART serkin_6 607 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00016 860 ProSiteProfiles PAC domain profile. 193 247 IPR000700 -
Pte5g00016 860 FunFam Probable serine/threonine-protein kinase cot-1 690 859 - -
Pte5g00016 860 MobiDBLite consensus disorder prediction 73 114 - -
Pte5g00016 860 Gene3D Phosphorylase Kinase; domain 1 606 690 - -
Pte5g00016 860 Pfam PAS domain 429 521 IPR000014 -
Pte5g00016 860 Pfam PAS domain 140 236 IPR000014 -
Pte5g00016 860 ProSiteProfiles Protein kinase domain profile. 607 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00016 860 ProSiteProfiles PAC domain profile. 480 534 IPR000700 -
Pte5g00016 860 SUPERFAMILY Protein kinase-like (PK-like) 586 857 IPR011009 -
Pte5g00016 860 SUPERFAMILY PYP-like sensor domain (PAS domain) 422 521 IPR035965 -
Pte5g00016 860 PANTHER FLIPPASE KINASE 1-RELATED 87 855 - -
Pte5g00016 860 Gene3D PAS domain 133 301 - -
Pte5g00016 860 SMART pac_2 196 238 IPR001610 -
Pte5g00016 860 SMART pac_2 483 525 IPR001610 -
Pte5g00016 860 FunFam LOV domain-containing protein 606 690 - -
Pte5g00016 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Pte5g00016 860 Gene3D Transferase(Phosphotransferase) domain 1 691 858 - -
Pte5g00016 860 MobiDBLite consensus disorder prediction 68 114 - -
Pte5g00016 860 CDD STKc_phototropin_like 605 856 - -
Pte5g00016 860 CDD PAS 146 235 IPR000014 -
Pte5g00016 860 ProSiteProfiles PAS repeat profile. 119 192 IPR000014 -
Pte5g00016 860 Pfam Protein kinase domain 609 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00016 860 SUPERFAMILY PYP-like sensor domain (PAS domain) 140 232 IPR035965 -
Pte5g00016 860 FunFam Putative LOV domain-containing protein 133 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00016 Pte-Chr5 398082 414532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00016 114 856 AGC Kinase Gene Family AT5G58140 74.599 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pte5g00016 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00016 K20715 - jre:108997379 1253.04