Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01298 ATGGAAGAAAATCGCCAACCAAAACACGTGTGTAAGTTTTGTGGCAAGAGTTTTCCGTGTGGCAGATCCTTGGGTGGTCATATGAGGTCTCATGTCATTAACAATTCAGCTCAAACAGATGAGGAACTTGAAGTGAAGAAGTTGAGCACAGTTAACAATGGTTATTGCCTAAGAGATAACCCAAAAAAAACTTGGAGAGCTGCTGATATCAGTGTAGAAGTTTTTCTTCAAGACAAGCCGTGCAAAGAGTGTGGTAAAGGATTTCATTCCTGGAAAGCGCTATATGGTCACATGAAATGCCATTCAGATAAAGAGAGAGTTTACAACAACTTGGAAGAACATCAAGATTCATGGATTGATGAGAATATAAACCAGAAGCTGGTACTGGATGGCCAATCCGACAATGAACTTTCTGCTCCCAATCGTAGAAAGAGATCAGAAAGAAGAACAAGGTATACAGCAACTGCAACGTCTGCTTTCTCATTAGCCGATCCTGCTGCTTCTCTTTCTGATAGTAAGCATGAACAGGAAGAAGTTGCTTTGAGCTTGATTATGCTTTCTAGGGACGCGGCTTCGTGGGGTGCTCTGAATTCTGTTACAGAGTCCTCTGAAAATGATTCCATGTATTTAAAAGCTCGAGCTAACCTTTTCAACCAAATCAAGCACAAGGAAGCTACATCTGAGATAGCAACACCGATAGAACAACAAGACAAGAAGGGGGAGATTGAAATTCCGGGTTTTGTGGAAGAACAAGGGATTCACTCAGAGACTTCGGACTCCGAATTTTCAAAAACTATGTCCAAAATGAAAAGAGCAAGAGTTTCAGTTATTGGGTTTCTTGATAGATTGAGGAACTCACACGCTGATTATCAATATCAACCTGAAGAAGCTGAGCATGAATTAAGTAACAAGATGATCAATGAAAAACAATCAGCTAAATTGAAGTTGTCTGGTAAGGGGTACACTTCAATCAAGAGGAAGTTCAGGGACTTATATGATTACAAAGTACGTAAGCCAAATCCCTTGAAACAAGTAGCAACCAAAGTTTCAGGTGAATTGTGCAGTAAGAGAAGCAAGTTTGAGTGCACTACTTGCAACAAGGTGTTCTCTTCTTACCAAGCTCTGGGTGGCCATAGAGCTAGTCACAGAAGAACGGTAGTCTGCACAGTTTCAAGTACAGAGAGTAGTGAAAAGAACACTGAGACAGATCTTTCGCCAGAGCAAACAGATGATAGTAAAGTCATCGAATCAAACAAGAAAGAATGTCTGGTCAATGATGAGGACCTGGTTTCTGTTTTTGATCGTGAAGGAGACACAATTACTAGAGGGTTCAAGAAGAACAAGGGGCACGAATGTTCCGTTTGCTTCAAGGTGTTCACATCAGGCCAAGCCCTGGGTGGTCACAAGAGGTCCCATTTGATTGGTAACAGTGACAGTAGAAACTGCGAAACATTAATAATTCCGAAAACCGTGTCTGAGTTTAGAAATTTTCTTGATCTTAATCTCCCTGCTTCTGCTGAAGAAGATAGCAACAGCCAGGTCTCATCCTACAGTCCACCATGGTGGGTATCAACAAGTTCTGCTCTCAGCTGA 1593 0.4149 MEENRQPKHVCKFCGKSFPCGRSLGGHMRSHVINNSAQTDEELEVKKLSTVNNGYCLRDNPKKTWRAADISVEVFLQDKPCKECGKGFHSWKALYGHMKCHSDKERVYNNLEEHQDSWIDENINQKLVLDGQSDNELSAPNRRKRSERRTRYTATATSAFSLADPAASLSDSKHEQEEVALSLIMLSRDAASWGALNSVTESSENDSMYLKARANLFNQIKHKEATSEIATPIEQQDKKGEIEIPGFVEEQGIHSETSDSEFSKTMSKMKRARVSVIGFLDRLRNSHADYQYQPEEAEHELSNKMINEKQSAKLKLSGKGYTSIKRKFRDLYDYKVRKPNPLKQVATKVSGELCSKRSKFECTTCNKVFSSYQALGGHRASHRRTVVCTVSSTESSEKNTETDLSPEQTDDSKVIESNKKECLVNDEDLVSVFDREGDTITRGFKKNKGHECSVCFKVFTSGQALGGHKRSHLIGNSDSRNCETLIIPKTVSEFRNFLDLNLPASAEEDSNSQVSSYSPPWWVSTSSALS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01298 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 382 IPR013087 -
Pte4g01298 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Pte4g01298 530 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
Pte4g01298 530 Pfam C2H2-type zinc finger 9 31 - -
Pte4g01298 530 Pfam C2H2-type zinc finger 81 103 - -
Pte4g01298 530 Pfam C2H2-type zinc finger 450 473 - -
Pte4g01298 530 Pfam C2H2-type zinc finger 360 384 - -
Pte4g01298 530 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
Pte4g01298 530 MobiDBLite consensus disorder prediction 130 152 - -
Pte4g01298 530 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Pte4g01298 530 Gene3D Classic Zinc Finger 1 105 - -
Pte4g01298 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Pte4g01298 530 SUPERFAMILY beta-beta-alpha zinc fingers 9 101 IPR036236 -
Pte4g01298 530 Gene3D Classic Zinc Finger 357 472 - -
Pte4g01298 530 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Pte4g01298 530 SUPERFAMILY beta-beta-alpha zinc fingers 360 472 IPR036236 -
Pte4g01298 530 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Pte4g01298 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Pte4g01298 530 SMART c2h2final6 79 101 IPR013087 -
Pte4g01298 530 SMART c2h2final6 9 31 IPR013087 -
Pte4g01298 530 SMART c2h2final6 450 472 IPR013087 -
Pte4g01298 530 SMART c2h2final6 360 382 IPR013087 -
Pte4g01298 530 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01298 Pte-Chr4 43803719 43805596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01298 445 508 C2H2 Transcription Factor Family AT1G26610 60.000 3.09e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte4g01298 zf-C2H2_6 6.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01298 - - jre:108990953 443.736