Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01286 ATGGGGCGCTCTCGCGGCAACTTCCATGCTGATGGAGACCTCACCCAGAGATCAAGGAGAAAAAAGAATGCTTCCATTGGAGAAAATACTGAATCTTCCACTGCAGGTCAAGGAACAAGCGAAGGGAAAAGGGCTCAATATCATTGCAATTATTGCAACAAGGATATCACTGGAAAGATACGAATAAAATGTGCTATGTGCCCTGATTTTGACCTATGCATAGAATGCTTTTCAGTAGGTGCTGAGTTGACACCCCATAAAAGCAATCATCCTTACAGGGTTATGGATAATTTATCTTTTCCTCTCATATGTGCTGACTGGAATGCTGATGATGAAATTCTACTTCTTGAAGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGAAATTGCTGAGCACGTTGGAACTAAGAGCAAAGAGCAGTGTGTAGAACACTATTCCTATGTTTATTTGAACTCTCCATACTTTCCCCTTCCGGACATGTCTCATGTTGTTGGAAAAAATAGAAAGGAACTTCTAGCCATGGCTAAAGGGCATGGGGAAGACAAGAAAGGAGTTTCTATGGGAGAGCTCTCTCTCAAGGAAGAATATCCATTTTCTCCTTCAAGGGTGAAGGTTGAAGATTCCCATAAAGGTGGTTCCTCGAGCCGGTTATCATCCAATTTCAATTTAGGTAATGGTCCCAATACTAGCACAAATACAACAGCATCAGCAACTAACAACAAAACCGCCAGTGTGGGCCGGGTCAAAGATGGACCAGTTGTCAAAATTGAAGAGCCTCAAGCAGATAGAACCTGTAAAGCGAAGAAACCAAATTCTTCAGGAACAGAAGGTCCTTCTTTGGTTGAGATCGGTGGCTATAACTCCAAAAGACAGGAGTTTGATCCTGAATATGACAATGATGCAGAACAACTACTGGCAGAAATGGAATTTAAGGATGCTGACTCAGAGGAAGAGCGAGAGTTAAAACTGCGTGTCTTGCGCATCTATGCAAAAAGACTTGATGAGAGGAAGCATAGAAAAGATTTCATACTGGAAAGAAATTTACTTTACCCAAATCCTTTTGAGAAGGACTTGACACCTGAAGAGAGGGCAATATGTCGCCATTACGACGTTTTTATGCGTTTCCACAGCAAGGAAGAGCATGAGGAGTTACTCCAAACTGTCATTTCTGAACACAGGACTCTAAAACGAATTCAAGAGCTCAAGGAAGCTAGAGGTGCTGGTTGCCGATCATCAGCTGAGGCAGATAGATATCTGGAACAAAAAAGGAAAAAGGGAGCTGATGAAAATGCTAGTAGGTCAAAAGAAAGCAACCAGGTTGGCCCAAGCAATCAGGGACTTTCTAATGCTTTCATTGGTGCAGAATCTACTGGCAAGGACTCAAGTGCACGACCAGCTATGCAGGCTACTGCAAGCTCTACAAATGAGATGGATATAGTGGGATACTATGGTGCAGATCTACTGTCTGAACTGGAGAAGCGACTGTGCTGTGAGCTGAGGTTGCCACCGCCTCTTTATCTTAAGATGCAAGAGGTTCTTTCAATGCAAATTTTCTGTGGCAACGTGAACACAAAATCAGATGCGCACCACTTATTCAAGATTGAATCGAGCAAAATTGATAGAGTCTATGATATGCTTGTGCGAAAGGGTATCACGCCCCCATAA 1668 0.4293 MGRSRGNFHADGDLTQRSRRKKNASIGENTESSTAGQGTSEGKRAQYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICADWNADDEILLLEGIEMYGLGNWAEIAEHVGTKSKEQCVEHYSYVYLNSPYFPLPDMSHVVGKNRKELLAMAKGHGEDKKGVSMGELSLKEEYPFSPSRVKVEDSHKGGSSSRLSSNFNLGNGPNTSTNTTASATNNKTASVGRVKDGPVVKIEEPQADRTCKAKKPNSSGTEGPSLVEIGGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERELKLRVLRIYAKRLDERKHRKDFILERNLLYPNPFEKDLTPEERAICRHYDVFMRFHSKEEHEELLQTVISEHRTLKRIQELKEARGAGCRSSAEADRYLEQKRKKGADENASRSKESNQVGPSNQGLSNAFIGAESTGKDSSARPAMQATASSTNEMDIVGYYGADLLSELEKRLCCELRLPPPLYLKMQEVLSMQIFCGNVNTKSDAHHLFKIESSKIDRVYDMLVRKGITPP* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01286 555 CDD SANT 107 146 IPR001005 -
Pte4g01286 555 Gene3D - 469 553 IPR036388 -
Pte4g01286 555 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Pte4g01286 555 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Pte4g01286 555 SMART sant 103 152 IPR001005 -
Pte4g01286 555 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Pte4g01286 555 MobiDBLite consensus disorder prediction 27 41 - -
Pte4g01286 555 SUPERFAMILY RING/U-box 45 109 - -
Pte4g01286 555 SMART zz_5 43 87 IPR000433 GO:0008270
Pte4g01286 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 145 IPR017930 -
Pte4g01286 555 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 46 550 - -
Pte4g01286 555 FunFam Transcriptional adapter 40 95 - -
Pte4g01286 555 FunFam Transcriptional adapter 2 470 554 - -
Pte4g01286 555 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Pte4g01286 555 MobiDBLite consensus disorder prediction 213 246 - -
Pte4g01286 555 Pfam Zinc finger, ZZ type 44 86 IPR000433 GO:0008270
Pte4g01286 555 MobiDBLite consensus disorder prediction 434 472 - -
Pte4g01286 555 Pfam Myb-like DNA-binding domain 107 146 IPR001005 -
Pte4g01286 555 ProSiteProfiles SWIRM domain profile. 469 555 IPR007526 GO:0005515
Pte4g01286 555 MobiDBLite consensus disorder prediction 1 41 - -
Pte4g01286 555 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Pte4g01286 555 MobiDBLite consensus disorder prediction 1 26 - -
Pte4g01286 555 PIRSF Txn_adaptor_ADA2 33 554 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pte4g01286 555 Gene3D - 38 95 IPR043145 -
Pte4g01286 555 Gene3D - 101 152 - -
Pte4g01286 555 MobiDBLite consensus disorder prediction 252 266 - -
Pte4g01286 555 SUPERFAMILY Homeodomain-like 472 552 IPR009057 -
Pte4g01286 555 FunFam Transcriptional adapter 2 100 152 - -
Pte4g01286 555 MobiDBLite consensus disorder prediction 202 284 - -
Pte4g01286 555 CDD ZZ_ADA2 47 95 IPR041983 -
Pte4g01286 555 MobiDBLite consensus disorder prediction 423 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01286 Pte-Chr4 43710149 43715992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01286 1 552 EF-hand Containing Proteins AT3G07740 46.329 1.48e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte4g01286 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01286 K11314 - qsa:O6P43_031359 875.544