Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01223 ATGATGCAGCAGGAGCTTCTTCAGGCCTCCTGGCCATTCTACGAGATCATTAATTCAGCATTTGATCATGTTGACCAATATGGCGTTAACATGGAGAATCATGTGGCAATGGGAGGGGGCGGTGGTGTTCAGTATCCTTCAGTGTTCACAGCCAAAGAGGAAGCATCGGAAGAAGGTTCCACGATCTCTTTCAATTCAAACATGTTCCTCAACGACTACTCACTTGAATATGGCACTCTTCACCTTCCTTCACTAGAAGAGGATTTCTCAGTGGAGTTGGAAGCATTTGATCCAGTTTCAAGTGATGAGGTCGATGGCTCATATCAGAACTATAAGGGTGTACGAGAGAGCGAGGAAAGTTTTCCATCTCAGCAGCCGTACTTCACTCAAAGAGATCATGAGGCTTGGAGTCCAAGCTCATCATTGATATCAGACCTATCCTGTGTATCTTCTGTCAAATTTTCACTAGTTTTACCAAAAGAAGAGATGGAGCTTGACAATCAGTTGAGCATTCGTCATCTACTCAAGGCTTATGGAGAGGCAATAGAGAAGCAACAGAAAGAGCTTGCGGAAGTAATCTTGAAGTGCATCTCCCAGAAAGTGAGTCCTCTTGGTGAGACCTATGAACGTCTTTCGTTTAATTTGTCTCAAGGTATTGAAAATCAAGGAGATTATTTGAGAGAAGAAGCGGTTAGAAATTTCAAAGATGCATTCAAGGCATTCTACCAAATATTCCCACATGGGAGATTTGCTCACTTTGCTGCTAATTCTGCATTTTTTGAATTTATGCCAGAGGGTGCAGATGTTATACACGCAGTGGAATTTGATATTGGAGAAGGGGTGCAGTGGCCTCCATTAATTGAGGCCATAGCACACCAAGGGAAAAAGATAATGAAATTGACATCAATTAACTGGGGGAGGGATAGCGTCAATGATAGTCCTTTACTTTTAAGATTTGAGGAGACTAGGAGGCAGCTCGTCGAACATGCCTCAACCTTTGGTCTTAAATTAATTGTGGAGGAGAAAGGAATTCAAGAGTTAGAAGATGAGCTAATGATAATGAAGAAAAAGGGTACAGAGAAAGAATGGTTTATATTTAATTGCATGGTGTCTCTACCACACATGGGAAGGCGAAGAAACAGAAGACATGTCATGGAGTTTCTAAGGCTAGCTAAGGATTTTGTATGCATTTCTGTAAATGATGCAGGTAAAATTGAAAGGGGTATCATAGCATTAGGTGATGGAGATGCATGTGAAGTTCAGGATAATTGTTCAAGTTTTGGATCATATTTCAATGGCCACATAATGCATTACCAAGCACTGCTGGAGTCAATAGGATCCAATTTCCCAGATAATCTTGCAGAAGCAAGAACAGCTATGGAGTGTCTCTTTGTGACACCATACATTAGCTCGCTTGCTTGGTCACAGAAGTGGGAGGACATGAGACAAGGTCACCATCTTCAAGCAGCTATTGGATTGGAGGGTCGTATATTGAGCAAAGAACTTATGATGGAATTAGAAGAAATGGTGAAACAGCAAGATAGTTCATATGAAGTAAGAGGTCAAAAGGAGAACTACAATCAAATTGCATTGGTATGGAAGCAAACTCCATTAGTGAGAGTCACTATATGGTGA 1635 0.4128 MMQQELLQASWPFYEIINSAFDHVDQYGVNMENHVAMGGGGGVQYPSVFTAKEEASEEGSTISFNSNMFLNDYSLEYGTLHLPSLEEDFSVELEAFDPVSSDEVDGSYQNYKGVRESEESFPSQQPYFTQRDHEAWSPSSSLISDLSCVSSVKFSLVLPKEEMELDNQLSIRHLLKAYGEAIEKQQKELAEVILKCISQKVSPLGETYERLSFNLSQGIENQGDYLREEAVRNFKDAFKAFYQIFPHGRFAHFAANSAFFEFMPEGADVIHAVEFDIGEGVQWPPLIEAIAHQGKKIMKLTSINWGRDSVNDSPLLLRFEETRRQLVEHASTFGLKLIVEEKGIQELEDELMIMKKKGTEKEWFIFNCMVSLPHMGRRRNRRHVMEFLRLAKDFVCISVNDAGKIERGIIALGDGDACEVQDNCSSFGSYFNGHIMHYQALLESIGSNFPDNLAEARTAMECLFVTPYISSLAWSQKWEDMRQGHHLQAAIGLEGRILSKELMMELEEMVKQQDSSYEVRGQKENYNQIALVWKQTPLVRVTIW* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01223 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 138 538 IPR005202 -
Pte4g01223 544 Pfam GRAS domain family 172 544 IPR005202 -
Pte4g01223 544 Coils Coil 175 195 - -
Pte4g01223 544 ProSiteProfiles GRAS family profile. 162 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01223 Pte-Chr4 43190353 43191987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01223 147 349 GRAS Transcription Factor Family AT1G66350 26.316 3.69e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte4g01223 GRAS 1.3e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01223 - - qsa:O6P43_016560 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g01223 4 43190353 43191987 Pte4g01223 4 43190353 43191987 RCT