Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01183 ATGAGTAGGGGACTTGAAATTCTTTCTCCATCCTCATATCTGCAGAACTCAAGTTGGTTGTTTCAGGAAAGCAAGGGAACCAAATGGACCCTTGAAGAGAATAAACTTTTTGAGAATGCCCTGGCTGTGTTTGATGAAGATACCCCTGATCGGTGGCTGAGAGTGGCAGCTATGATTCCAGGGAAGACTGTCGGTGATGTGATAAAACAATACAGGGAGTTGGAAGAAGATGTCAGTGACATTGAAGCTGGACTGATTCCAATTCCTGGATATGCTAGTAGTTCTTTCACATTAGAGTGGGTGAATAATCAAGGATTTGATGATTTGAAGCAATTATACGCTGTTGGTAGCAAAAGGTCTACTTCCACAAGGTCTTCTGAGCACGAAAGGAAGAAAGGAGTCCCATGGACAGAGGAGGAGCACCGGCAATTCTTAATGGGACTCCAAAAGTATGGAAAAGGTGACTGGAGAAATATCTCTCGTAACTTTGTGACTACTAGGACCCCTACTCAGGTTGCTAGTCATGCTCAGAAATACTTTATCAGGCATCTTGTGGGAGGGAAGGATAAGAGAAGATCAAGTATCCATGATATCACAACGGTGAATCTCCCGGATTCGAAGCTTCCTACACCTGAGACTAACGAGATTCCATCTTCTGATCATTCCACCAAGGTTTTGCGAACGCAACAAAATCAAAAAATTTCTTCCGTTGTGAAACATGACTATGATCATCAATTACAATACAAGGGAGCAGCTGTAGCTTATAATCCATCAAACGGAAGTACGTTTATGACACCTTTTTATGGAGTATCCTCAAATGAACCTAGGCCGCAGGAACAATACATTTTCAGAAGCACTCTTGTTGGCTCTCAGTGTGGAATTTATGATACCGGCTTTCAAATGCAGCGTCACTGA 915 0.4262 MSRGLEILSPSSYLQNSSWLFQESKGTKWTLEENKLFENALAVFDEDTPDRWLRVAAMIPGKTVGDVIKQYRELEEDVSDIEAGLIPIPGYASSSFTLEWVNNQGFDDLKQLYAVGSKRSTSTRSSEHERKKGVPWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRHLVGGKDKRRSSIHDITTVNLPDSKLPTPETNEIPSSDHSTKVLRTQQNQKISSVVKHDYDHQLQYKGAAVAYNPSNGSTFMTPFYGVSSNEPRPQEQYIFRSTLVGSQCGIYDTGFQMQRH* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01183 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 182 IPR006447 GO:0003677
Pte4g01183 304 SUPERFAMILY Homeodomain-like 130 182 IPR009057 -
Pte4g01183 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 247 IPR043363 -
Pte4g01183 304 FunFam Transcription factor SRM1 21 88 - -
Pte4g01183 304 SMART sant 25 77 IPR001005 -
Pte4g01183 304 SMART sant 132 182 IPR001005 -
Pte4g01183 304 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pte4g01183 304 SUPERFAMILY Homeodomain-like 27 81 IPR009057 -
Pte4g01183 304 Gene3D - 21 88 - -
Pte4g01183 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pte4g01183 304 MobiDBLite consensus disorder prediction 202 222 - -
Pte4g01183 304 CDD SANT 135 180 IPR001005 -
Pte4g01183 304 Gene3D - 134 184 - -
Pte4g01183 304 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pte4g01183 304 CDD SANT 28 74 IPR001005 -
Pte4g01183 304 FunFam transcription factor MYB1R1 134 185 - -
Pte4g01183 304 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01183 Pte-Chr4 42787754 42792016 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte4g01183 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01183 - - qsa:O6P43_026398 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g01183 4 42787754 42792016 Pte4g01183 4 42787754 42792016 RCT
Pte4g01183 4 42787754 42792016 Pte16g00858 16 27719514 27721323 RCT
Pte4g01183 4 42787754 42792016 Pte8g00734 8 30632508 30632936 RCT
Pte7g01313 7 37518210 37519582 Pte4g01183 4 42787754 42792016 RCT