Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01140 ATGGAACAGAGTGGATATTGGATGTGGGAGAAAAGGAAGCACAGCATGAGTTCTCTTGGCTCAACAAATAATCCATCCTATGATGATTCATGGGAAGAACAAGCTTTTGCTGAAGACACAGCTGGGATTCTTGGTGGTTGTGTATGGCCACCAAGATCCTATTCTTGCAGCTTTTGCAGGAGAGAATTCCGGTCGGCACAAGCTCTTGGCGGACATATGAATGTCCACAGAAGGGATAGGGCTAGACTAAAGCAATCCCCATGTTCCCAAGATGAGATTAGACATCATGATGATCTTCAGATTCATCAGAGTTCAGTCCACAACCCTTTTGCATCTTTGAGTTACTTATACCCTTCAAAGGTTTGTGGCTTGACTTTTAGCATTAACCCTAACTCTGATCCTACTGTTGTTGTATCACCATCATCTGAACCTTCTGCTGTTTCAGCTCCACCAACAGCTGAAATATTCTGTGCGGATAAACTGTTCCCTTCTTATAATTCTTCAATGGTCAGAGAAAACTTCAAGTACCCTGTTTGTAATTATTCCCCCAAGTCCTCGTCACCTTTTGTTGAAGAGAAAAACATGTATTCAGATGACAAGTTCAATTCCAAGAATGATTGTCAGAAGGTCTCGAAGATTTTAAATGCAGGGCAAAGAGACCAAAATGATTATCTCAAAACTGATTTGTCTGTGAGTTTGAATTTGGTTGTCTGTCGAGCTCAACCAGCTCTAGAGTATGAAACTAGAGAGAAGACTATCGGTTGCAAGAGAAAGAGAACAGATTCAACAATACCATTGTTCCTAAATTCAACGTCTGTTGAGCGACACCAGACACATCAAAAGGTGTTTGAGATAAGCCCTAACCCCATAGAAGAGCTGGATCTGGAACTAAGGCTTGGGGTAGACAGGCCACAGTCATAA 921 0.4191 MEQSGYWMWEKRKHSMSSLGSTNNPSYDDSWEEQAFAEDTAGILGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSPCSQDEIRHHDDLQIHQSSVHNPFASLSYLYPSKVCGLTFSINPNSDPTVVVSPSSEPSAVSAPPTAEIFCADKLFPSYNSSMVRENFKYPVCNYSPKSSSPFVEEKNMYSDDKFNSKNDCQKVSKILNAGQRDQNDYLKTDLSVSLNLVVCRAQPALEYETREKTIGCKRKRTDSTIPLFLNSTSVERHQTHQKVFEISPNPIEELDLELRLGVDRPQS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01140 306 PANTHER OS07G0101800 PROTEIN 25 303 - -
Pte4g01140 306 SMART c2h2final6 54 76 IPR013087 -
Pte4g01140 306 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Pte4g01140 306 Gene3D Classic Zinc Finger 51 115 - -
Pte4g01140 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Pte4g01140 306 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01140 Pte-Chr4 42401230 42402150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01140 28 305 C2H2 Transcription Factor Family AT2G37740 35.577 1.40e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte4g01140 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01140 - - pvy:116134396 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g01140 4 42401230 42402150 Pte4g01140 4 42401230 42402150 RCT