Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01101 ATGGCTGCTCTAGAAAATAAGACAGTCGTCCTAGTGACACATCAAGTGGAGTTTCTCTCAGACGTGGACAAAATCGTTGTAATGGAGGATGGAAAAATGGCACAATCAGGCAGCTTTGAAGACCTTTTGATGGTTGGCACACCCTTTGAACAACTTGTGAATGCTCATAAAGATGCAATAACAATGTTGGATACTGATAACAAAGGCCAAGGGGAACCTGAAAAAATAACTACTCCATTGCCAGAGAAGGCTGAAGGTTCAATTCTCATTAAACAAGATAGCGAGGCAGACATTTCTTCCAAAGGTCCTGCTGGGGTACAACTTACACAGGAGGAAGAAATGGAGATTGGTTATGTTGGGTGGAAGCCATTTTGGGATTATCTCTTCTTTAGCAAAGGAGCATGTCTTCTCTGTGTTTGCCTGTTAACTCATATAGGTTTTGTTGGTTTTCAGGCTGCAGCTACTTACTGGCTTGCTCTTGCCATCCAGATTCCAAATATCACCAATGCCTTGCTCATTGGAACCTACACTGCAATTTCATTCCTTAGTGCTATGTTCATATTCTTTAGGTCCTTGTCTGTGGCTCATCTTGGACTAAAAGGTTCCAAAAGCTTCTTCACAGCCTTCAACAATGCTATCTTCAAAGCTCCAATGTTATTTTTCGACTCAACCCCCGTGGGGCGGATATTGACTCGGGCGTCGTCAGATTTGAGTATTTTGGATTGTGACATACCGTCCTCCATCGTCTTTACAGTAGCTCCAGCAATTGACATTCTTGCAATCATTGTCATTATGGCTTCAGTCACATGGCAAGTCCTTATTGTGGCTATCCCTGCTATGGTGGCAACAAAATTCATTCAGGATTACTATAATGCCTCTGCAAGGGAACTGATCAGGATTAATGGGACAACAAAGGCTCCAGTCATGAATTATGCGTCTGAGACATCACTTGGAGTAGTGACTATAAGAGCATTTAACATGGTTGATAGATTTTTCAGAAACTACTTAAAGCTAGTTGACACAGATGCTAGACTGTTCTTTTATTCAAACGGATCCATGGAATGGTTAATTCTAAGGATAGAAATACTTCAAAACTTGACACTTTTTGCTGGTGCTTTCTTAATTGTTTGTCTTCTTAACGGATTCATATCCCCAGGGCTTGCGGGACTCTCTCTATCATATGCTTTGTCACTGACAATGACCCAAATCTTTTTATGCCGGTGGTATTGCAACTTATCAAACTATATTATATCAGTCGAAAGAATCAAGCAATTTATTCACATACCGCCAGAACCTCCTGCTATTGTTGAGGAAAATAGGCCACCATCTTCATGGCCTTCCAAGGGTAGAATAGAGTTGCAAGCACTGAAGATAAGGTACCGTGAGAATGCTCCATTAGTTCTCAAGGGAATCAGTTGTACATTTAAAGAAGGGCACAGAGTGGGTGTAGTGGGGAGAACTGGAAGTGGAAAAACCACACTCATAAGTGCACTGTTTCGTTTAGTTGAGCCTGCAAGTGGACAAATTCTCATTGATGGGGTTAACATCTGCTCAATTGGATTGAAGGACTTGAGGGTGAAGCTCAGCATCATTCCTCAAGAGCCAACTCTTTTCAGAGGAAGCATTAGAACCAACTTGGACCCTCTAGGCTTGTACTCTGATGAAGAAATATGGAAGGCTTTAGAGAAATGTCAGCTGAAGGCAACAATCAGCAGCCTGCCAAATCTCTTGGACTCATCTGTGAGTGATGAAGGTGAAAATTGGAGTGCTGGGCAACGCCAACTCTTTTGCCTTGGAAGAGTACTTCTTAAAAGAAACAAAATTCTTGTTCTAGATGAAGCTACAGCTTCTATTGATTCTGCTACAGATGCCATACTTCAACGAATCATCAGACAAGAATTCTCAGATTGCACTGTGATCACTGTGGCTCACAGGGTTCCAACTGTGCTAGATAGTGATTGGGTCATGGTCTTATCATATGGAAAATTGTTGGAGTACGACGAACCTTCCAAGCTTATGGAGACAAACTCATCATTCTCAAAGCTGGTAGCTGAATACTGGTCCAGCTGTGGGAAGAATTAG 2082 0.4198 MAALENKTVVLVTHQVEFLSDVDKIVVMEDGKMAQSGSFEDLLMVGTPFEQLVNAHKDAITMLDTDNKGQGEPEKITTPLPEKAEGSILIKQDSEADISSKGPAGVQLTQEEEMEIGYVGWKPFWDYLFFSKGACLLCVCLLTHIGFVGFQAAATYWLALAIQIPNITNALLIGTYTAISFLSAMFIFFRSLSVAHLGLKGSKSFFTAFNNAIFKAPMLFFDSTPVGRILTRASSDLSILDCDIPSSIVFTVAPAIDILAIIVIMASVTWQVLIVAIPAMVATKFIQDYYNASARELIRINGTTKAPVMNYASETSLGVVTIRAFNMVDRFFRNYLKLVDTDARLFFYSNGSMEWLILRIEILQNLTLFAGAFLIVCLLNGFISPGLAGLSLSYALSLTMTQIFLCRWYCNLSNYIISVERIKQFIHIPPEPPAIVEENRPPSSWPSKGRIELQALKIRYRENAPLVLKGISCTFKEGHRVGVVGRTGSGKTTLISALFRLVEPASGQILIDGVNICSIGLKDLRVKLSIIPQEPTLFRGSIRTNLDPLGLYSDEEIWKALEKCQLKATISSLPNLLDSSVSDEGENWSAGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRIIRQEFSDCTVITVAHRVPTVLDSDWVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCGKN* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01101 693 Gene3D - 1 67 IPR027417 -
Pte4g01101 693 CDD ABCC_MRP_domain2 449 669 - -
Pte4g01101 693 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 683 - -
Pte4g01101 693 FunFam ABC transporter C family member 5 101 432 - -
Pte4g01101 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 684 IPR027417 -
Pte4g01101 693 Gene3D - 434 685 IPR027417 -
Pte4g01101 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 453 685 IPR003439 GO:0005524
Pte4g01101 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 55 IPR027417 -
Pte4g01101 693 CDD ABC_6TM_ABCC_D2 133 426 IPR044726 GO:0140359
Pte4g01101 693 Pfam ABC transporter 468 616 IPR003439 GO:0005524
Pte4g01101 693 SUPERFAMILY ABC transporter transmembrane region 122 433 IPR036640 GO:0005524|GO:0016020
Pte4g01101 693 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 414 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g01101 693 SMART AAA_5 477 665 IPR003593 GO:0016887
Pte4g01101 693 FunFam ABC transporter C family member 3 434 685 - -
Pte4g01101 693 Gene3D ABC transporter type 1, transmembrane domain 104 432 IPR036640 GO:0005524|GO:0016020
Pte4g01101 693 Pfam ABC transporter transmembrane region 171 400 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01101 Pte-Chr4 42080076 42084569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01101 449 683 Calmodulin-binding Proteins AT2G36910 31.381 2.49e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01101 - - qsa:O6P43_018290 1074.31