Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01100 ATGATTTCCCTTGAAAGTGTTCCAGGAATGTTTTCATGGATTTGTGCTGGACAACTTGGTTTGGCTTCTTTCTGCATCCAAAGGACCATAGTAGACATTGTAAACCTGGTTTTTGCATGTGTTTTCTATGTAACTTTGCTCGTCAATTCCTTGAGACAAACTCACGTCAGAGAGAGTGATAGAAGAGGGTGGCTCTTCACCTTTGCTTCTATCTGCTGTGGCCTAATCAGTATTGCATATTTCATCTACGGTTTTTGGAATCTAGTAGGTAAAACCAGTGAATCCAATCCGTCGGCCTGGCTTGTTTACATACTGAAAGGACTAATTTGGATGTCTTCTACAGTTTCTGTGCTTGCTCAAAGGTCCAAATGGATCAAAGTTCTAAACTTTGTTTGGTGGGTATTATCATGTCTGCTGGTTTCAACTCTCAACATTGAGATTCTCATCAAAGTCCACAAAATTCAATCGTTTGATCTTCTGGAATGGTCTATAAACTTCATACTTCTCTTCTGTGCCATTAGAAACCTTTGTTGCTTAGTCAGCGAACAAAGACAAGATAGCAGCCTATCTGAACCTCTCGTAGCACAGAAGAAAGAGAGAGAAAAATGCAAATTTACCTTCTTCAATAGATTCACATTCTCATGGATTGATCCATTACTTCGTTTAGGTTACTCGAAACCACTGGCTCCCGAAGATGTTCCTTCTCTGGAATCTGAGGATGAAGCAAATGTTGCCTATGAAAAATTTCAAGCAACGTGGAGCTCCCTATTGAGGGGAAAGACCTCAAACAGCGAAAGAAATTTAGTCCTTTGGACCATAACAAGGGTTTACTTAAACGAAAACATTTATATAGCTATCTGTGCTTTACTTAGGACAATTGCAGTTGGCGTTTCTCCTTTGATACTATTTGCATTTGTGAACTACATGAACAATGCTCAGGAAGATCCACAAGAAGGCCTCTATATTTTGGGTTGTTTAATTGTATGTAAAGTGGTCGAGTCTTTATCTCAGAGACAGTGGTTCTTTCATTCTAGGCGATCTGGTATGAAAATGAGATCAGCTTTAATGGTGGCAGTATATCAGAAGCAGTTGAAGCTTTCAAGCTCAGGCAGGAGAAGGCACTCAACAGGTGAGATTGTGAATTACATTGCAGTTGATGCTTATAGGATGGGAGAGTTTCCATGGTGGTTTCACACATCCTGGAGTTGTGCGGTGCAACTTTTTCTTGGCGTTGCTGTTCTTTTTAAGGTTATGGGCATTGGCGCCCTTCTTGGTTTAGTTCCTTTTCTGATATGTGGACTGCTAAATGTTCCATTTGCAAAGATGCTGCAAAGGTGTCAGATGGGGTTGATGGTTGCTCAAGATGAACGTTTAAGAACTACTTCAGAGATCCTGAACAACATGAAAGTCATAAAGCTACAATCCTGGGAGGACAGGTTCAAGATTTTGATCGAGACGTTTCGTGCTAGAGAATTTAATTGGTTAGCTGAGGCACAGTTTAAGAAAGTTTATGGAACGCTAATGTATTGGATGTCACCAACAATCGTTTCTGCGGTTGTTTTCTTCGGGTGTGCTCTATTTAATAGTTCTTCATTGAATGCTGCATCCATCTTCACAGTTCTTGCAACGTTAAGGGTCATGTCAGAACCAGTAAGGGCTATACCCGAGGGACTGTCTATTTTGATCCAAGTGAAAGTCTCATTCGATAGGCTCAACCGTTTCTTGCTGGATGATGAGATTAAAGCTGACGAATTCAGAAATTGGAAGCAAGATGAAGATAGCAGTATCATAATACGTGAAGGTCATTTCAATTGGGATGAGAATTCAGCAACTCCAACGTTGAGAGATCTTAATTTAAAAATCAAATGGGGTCAGAAAATTGCAGTCTGCGGACCAGTTGGAGCAGGAAAATCATCTCTATTACATGCCATTCTTGGAGTAATACCAAAACTTTCAGGATCTGTTAGTGTATATGGAAGCGTTGCATATGTTGCCCAAACTGCTTGGATCCAAAGTGGGACGGTTCGTGATAACATACTATTTGGGAAGCCAATGGATACAGCCAAATATGAGAATGCAATCAAAGCATGTGCTTTGGATAAGGACATCAGTAACTTCAGCCATGGTGATCTCACGGAGATTGGTCAGAGAGGGCTTAACTTGAGTGGAGGACAGAAGCAGAGGCTGCAACTTGCTCGAGCCGTGTACAATGATGCTGATATATATCTTCTTGATGACCCCTTCAGTGCAGTAGATGCACATACAGCAGCAGCTTTATTCAAGGTTTAA 2289 0.4089 MISLESVPGMFSWICAGQLGLASFCIQRTIVDIVNLVFACVFYVTLLVNSLRQTHVRESDRRGWLFTFASICCGLISIAYFIYGFWNLVGKTSESNPSAWLVYILKGLIWMSSTVSVLAQRSKWIKVLNFVWWVLSCLLVSTLNIEILIKVHKIQSFDLLEWSINFILLFCAIRNLCCLVSEQRQDSSLSEPLVAQKKEREKCKFTFFNRFTFSWIDPLLRLGYSKPLAPEDVPSLESEDEANVAYEKFQATWSSLLRGKTSNSERNLVLWTITRVYLNENIYIAICALLRTIAVGVSPLILFAFVNYMNNAQEDPQEGLYILGCLIVCKVVESLSQRQWFFHSRRSGMKMRSALMVAVYQKQLKLSSSGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTSWSCAVQLFLGVAVLFKVMGIGALLGLVPFLICGLLNVPFAKMLQRCQMGLMVAQDERLRTTSEILNNMKVIKLQSWEDRFKILIETFRAREFNWLAEAQFKKVYGTLMYWMSPTIVSAVVFFGCALFNSSSLNAASIFTVLATLRVMSEPVRAIPEGLSILIQVKVSFDRLNRFLLDDEIKADEFRNWKQDEDSSIIIREGHFNWDENSATPTLRDLNLKIKWGQKIAVCGPVGAGKSSLLHAILGVIPKLSGSVSVYGSVAYVAQTAWIQSGTVRDNILFGKPMDTAKYENAIKACALDKDISNFSHGDLTEIGQRGLNLSGGQKQRLQLARAVYNDADIYLLDDPFSAVDAHTAAALFKV* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01100 762 Pfam ABC transporter 614 748 IPR003439 GO:0005524
Pte4g01100 762 ProSitePatterns ABC transporters family signature. 721 735 IPR017871 GO:0005524|GO:0016887
Pte4g01100 762 Pfam ABC transporter transmembrane region 282 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g01100 762 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Pte4g01100 762 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 761 - -
Pte4g01100 762 Gene3D ABC transporter type 1, transmembrane domain 270 574 IPR036640 GO:0005524|GO:0016020
Pte4g01100 762 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 598 762 IPR003439 GO:0005524
Pte4g01100 762 SUPERFAMILY ABC transporter transmembrane region 270 577 IPR036640 GO:0005524|GO:0016020
Pte4g01100 762 FunFam Multidrug resistance-associated protein 1 579 762 - -
Pte4g01100 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 761 IPR027417 -
Pte4g01100 762 Gene3D - 575 762 IPR027417 -
Pte4g01100 762 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g01100 762 CDD ABCC_MRP_domain1 596 761 - -
Pte4g01100 762 FunFam ABC transporter C family member 10 265 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01100 Pte-Chr4 42077358 42079996 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01100 603 755 Calmodulin-binding Proteins AT2G36910 34.132 1.03e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01100 - - qsa:O6P43_018290 1066.22