Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01090 ATGAGCCGTTACGATAGTCGCTCCGGCGACCCCAGTTCATATCGTGACCGGAGAAGCGATTCTGGATTTGGGGCATCAAATGGTTATGGTAGTTCAGTACGTTCGTCATCGACCAAGAAGGATTATGATGGTGCGGAGGGTCCCAGGAAGCTGGACTTGGACGGGTTGACTCCCTTTGAGAAAAACTTTTACCGTGAGACTCCAGAAATAGCAAGAATGTCAGAGGCAGAGGTTGAGGAGTATAGGCAGAAGAGGGGAATAACTATTGAGGGGCAAGATGTTCCAAAACCCATCAAGAGTTTTAAAGATGCTGGATTTCCAGATTATGTTATGCAAGAAATTGAAAAAGCTGGCTTTGTTGAACCTACTGCCATTCAATCTCAAGGTTGGCCTATGGCTTTGAAGGGCCGTGATCTTATTGGTATTGCAGAAACAGGATCTGGCAAAACACTTGCTTACCTATTGCCTGCAATTGTGCATGTCAATGCTCAACCTTTCCTGGCCCCTGGAGATGGACCAATTGTTCTAGTTTTGGCTCCAACTCGTGAACTTGCTGTACAAATACAACAAGAGGCTACAAAATTTGGAGCATCTTCAAAAATTAAGAACACGTGCATCTACGGAGGAGTTCCAAAAGGGCCTCAGGTGCGTGACCTCCAGAAAGGTGTTGAAATTGTAATTGCCACCCCAGGAAGGTTGATTGATATGTTGGAATCAAACCATACGAATCTTCGTAGGGTTACATACTTGGTTTTGGATGAGGCTGATCGTATGCTGGACATGGGATTTGAGCCTCAAATACAGAAAATCGTTTCGCAGATACGTCCAGACCGACAAACTTTATACTGGAGTGCTACCTGGCCTAAGGAGGTTGAACAACTTGCAAGGAGTTTCCTTTATAACCCGTACAAAGTAACCATTGGTTCGTCAGATTTAAAGGCTAACCATGCGATACGCCAATATGTAGACATTGTTTCTGAAAATCAGAAGTATAATAAATTGGTAAAATTATTGGAGGACATTATGGATGGAAGCCGAATACTTGTATTTTTGGATACGAAAAAGGGATGTGATCAGGTCACTCGACAGCTCCGCATGGATGGTTGGCCTGCTCTTGCAATTCATGGAGATAAAAGCCAGGCAGAAAGGGATTGGGTACTATCTGAGTTTAAATCTGGCAAAAGCCCTATTATGACTGCTACAGATGTTGCAGCTCGTGGGTTAGATGTGAAGGATGTGAAGTATGTGATAAACTATGATTTCCCTGGATCTCTTGAGGATTATGTTCATCGTATAGGCCGTACTGGCAGAGCAGGGGCCAAAGGAACAGCATATACATTCTTCACAGCAGCTAATGCCAGATTTGCCAAAGAACTTATAGGAATACTTGAGGAAGCTGGACAGAAGGTTAGTTCGGAATTGGCAGCAATGGGGCGTGGTGCTCCTCCTCCTCCAGGTCATTCAAGGTATCGCGATGTTGGGAGGAGTAATGGTGGCGGCCGCTCCTGGAGCTAA 1515 0.4488 MSRYDSRSGDPSSYRDRRSDSGFGASNGYGSSVRSSSTKKDYDGAEGPRKLDLDGLTPFEKNFYRETPEIARMSEAEVEEYRQKRGITIEGQDVPKPIKSFKDAGFPDYVMQEIEKAGFVEPTAIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQIQKIVSQIRPDRQTLYWSATWPKEVEQLARSFLYNPYKVTIGSSDLKANHAIRQYVDIVSENQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQVTRQLRMDGWPALAIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSSELAAMGRGAPPPPGHSRYRDVGRSNGGGRSWS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01090 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Pte4g01090 504 SMART helicmild6 358 439 IPR001650 -
Pte4g01090 504 MobiDBLite consensus disorder prediction 39 54 - -
Pte4g01090 504 MobiDBLite consensus disorder prediction 1 17 - -
Pte4g01090 504 Gene3D - 306 479 IPR027417 -
Pte4g01090 504 MobiDBLite consensus disorder prediction 1 54 - -
Pte4g01090 504 Gene3D - 62 305 IPR027417 -
Pte4g01090 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Pte4g01090 504 MobiDBLite consensus disorder prediction 474 504 - -
Pte4g01090 504 CDD DEADc_DDX5_DDX17 110 306 - -
Pte4g01090 504 CDD SF2_C_DEAD 318 448 - -
Pte4g01090 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Pte4g01090 504 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Pte4g01090 504 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Pte4g01090 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 72 477 - -
Pte4g01090 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Pte4g01090 504 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
Pte4g01090 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
Pte4g01090 504 MobiDBLite consensus disorder prediction 24 38 - -
Pte4g01090 504 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Pte4g01090 504 SMART ultradead3 118 321 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01090 Pte-Chr4 42025609 42030709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01090 87 459 Eukaryotic Initiation Factors Gene Family AT3G19760 34.400 1.42e-75 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01090 K12823 - pvy:116144957 859.366