Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01082 ATGGAATCTCACACTCGCTCAAGCAATCCCAACAACGACGTTAATTATGACAAGAACAACAAACTTAATACTATGAACCACTCGAGAAATGGTAACAACAGAAGTACTCCCATACAGGCTTGTGCTGTTTGTAAGCACCAACGTAGGAAGTGCACTCCTGACTGCATTCTCGCCCCTTATTTTCCTCACGATCGTCAAAGACAGTTCCTCAATGCACATAAATTGTTTGGTGTCAGCAACATCACCAAGATCATTAAACACCTTGACCCTTTTCAGAAAGACGAAGCCATGCGTTCCATCATTTACCAATCTGACGTTCGCGCCTGTGACCCTGTTGGAGGTTGTTACAGGATCATACATGAGCTGCAAACTCAGATTGAATACCACAAGGCTGAGCTTGAGCTTGTTCTTCAACAACTAGCCATTGTCAAATCCCAAGTTTACCAACAGCAGAAGCTTCATCTGCTTCATCATCAAAAGTTGCACGTGACAGAACCGACCAATGCAGCTACATCATCGACGGTGATCAACATGAATGTTGGTGGGGATGACATGCTGAATGCTGATGCTTTGAGCTTATACAATTATCCGTATTCTCAACAGCAGGAGCCGCCGCAAGACCCATTCCAGATGGCCATGACGACACGTAATCTCAGCAATAGCAATTGCTCTGTGCAAGAAGATTCATCAAATTCATGGGTTGTGCAAAACGCTACGGCTATGTCAGCATTGTCATTGCATGGCAACAATGAATTTGAAAGTAAGGCATTATTGGAGATACCTTCTGATTGTAGAAATGACCTCTTCAGATTTGATCTAGAAGAATTAGCATAA 834 0.4317 MESHTRSSNPNNDVNYDKNNKLNTMNHSRNGNNRSTPIQACAVCKHQRRKCTPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDPFQKDEAMRSIIYQSDVRACDPVGGCYRIIHELQTQIEYHKAELELVLQQLAIVKSQVYQQQKLHLLHHQKLHVTEPTNAATSSTVINMNVGGDDMLNADALSLYNYPYSQQQEPPQDPFQMAMTTRNLSNSNCSVQEDSSNSWVVQNATAMSALSLHGNNEFESKALLEIPSDCRNDLFRFDLEELA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01082 277 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Pte4g01082 277 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 197 - -
Pte4g01082 277 Coils Coil 119 139 - -
Pte4g01082 277 MobiDBLite consensus disorder prediction 1 33 - -
Pte4g01082 277 Pfam Lateral organ boundaries (LOB) domain 40 135 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01082 Pte-Chr4 41920980 41921813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01082 39 236 AS2 family AT3G13850 51.500 6.43e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte4g01082 LOB 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01082 - - vum:124830493 241.506