Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01081 ATGTCAAGCTACAGCAACAGCAGCAACAGCAACTTCATAGAAGAGAACATGTCTAACTTGACTTCAGCTTCTGGTGAAGCAAGTGCTTCCTCGGGAAGCAAGGATGAAGTTGGTACAAGTACTAATTATCCTCAACAGTACTTGGCTTCATCACAAACTCAATCTCAAACTCATCCTGCGAAGAAGAAAAGAAGCCTTCCTGGGAACCCAGATCCTGAGGCTGAGGTTATCGCTTTGTCCCCCAAGACTCTTTTGGCTACCAACAGGTTTATCTGTGAGATCTGTAATAAGGGATTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGTCACAACCTGCCATGGAAGCTTAAGCAAAGGACAAGTAAAGAGATAAGGAAGAAGGTGTATGTCTGTCCAGAACCAGCCTGTGTACACCATGACCCATCAAGAGCTCTTGGTGACTTAACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGCGACAAGTGCTCAAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGTACTCGGGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGAAGGGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGCCATCACTACAAACCCTTTGCTTCCTTCTCATCAACCATCAGGATCTTCAGCATCACCCATGAACATGAATCAAGTCCAACAACCCCAGTTCAATCCTCAAGAGCTTCATGCATTCTCTTTGAAAAAGGAGCCACTAAACTTCAACCTTCGGCCAGAGATGCCACCATGGTTAGCATTTCCTGGTGGACCACACGCGTCTGATGTGTCCTCATCTTCATCATCAATCTTCTCCACAAGATTAGATCATCATCAAGATCAGTTTCCACCAGCTCATCACCAACGTCAACATCTGTATAATGAGAACCCAAATTCCAATTCCAACCCAATGTCAAACCCTAACCCTAGCTTAGGCCCCACCCTTCCTGCCTACCAAACTCCAGCTCCCTCACCTCACATGTCAGCCACTGCACTGTTGCAGAAAGCAGCTCAGATGGGTGCTAGCATGAGCAAAACTGGTTCATCAGCAGGCACGGTAAGGCCCCACACAGGAGCTCATCTGTCTGTGGATATGGGAAACAATACAAGTGGCAGTGGCAGTAGTTTCGGCCTGAAATTGTCATCACGTGAAGAACAGAATCAGAGAGCCACCGGGTTTGCCCATAGCTTAGTTCCTTTTGGGAATAAAGCTGGTGCAGTGGCTTCTGCTATTGCAGGGAACACAACAGCCACTGTTGATAACAGTACTGCTGTTGCTTCAGGTATAGGTATTACCCCGTCCTTCCTTCAAGGAATGATGAATTCTTTGTCTTCTGGTAATACTATCAATCCTAGCTTTGAAGGGAGTCATTTATTTGAAGATCCATTTTGTGGGATTTTGAATTCTAACAAAGATGGCAGTGCCATAGGTGTCAGTCTCGCAAAAACCAGCTACCTATATAAGAGTGAAGCTGATCATGAAGTTGCCAAAAATGGGGGTCATGGCAATGACAGTTTGACTAGGGATTTCTTGGGACTCAAGCCTCTTCCACAAAGTGACATTTTCAGCATGGCTAGTATTGGAAACTGCATGGGAGACTCACATTTAGAACAGCAGAGTACTCAATCCCAAAAACAGTAG 1728 0.4514 MSSYSNSSNSNFIEENMSNLTSASGEASASSGSKDEVGTSTNYPQQYLASSQTQSQTHPAKKKRSLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITTNPLLPSHQPSGSSASPMNMNQVQQPQFNPQELHAFSLKKEPLNFNLRPEMPPWLAFPGGPHASDVSSSSSSIFSTRLDHHQDQFPPAHHQRQHLYNENPNSNSNPMSNPNPSLGPTLPAYQTPAPSPHMSATALLQKAAQMGASMSKTGSSAGTVRPHTGAHLSVDMGNNTSGSGSSFGLKLSSREEQNQRATGFAHSLVPFGNKAGAVASAIAGNTTATVDNSTAVASGIGITPSFLQGMMNSLSSGNTINPSFEGSHLFEDPFCGILNSNKDGSAIGVSLAKTSYLYKSEADHEVAKNGGHGNDSLTRDFLGLKPLPQSDIFSMASIGNCMGDSHLEQQSTQSQKQ* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01081 575 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Pte4g01081 575 MobiDBLite consensus disorder prediction 320 342 - -
Pte4g01081 575 MobiDBLite consensus disorder prediction 1 74 - -
Pte4g01081 575 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pte4g01081 575 MobiDBLite consensus disorder prediction 308 357 - -
Pte4g01081 575 Gene3D Classic Zinc Finger 69 136 - -
Pte4g01081 575 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Pte4g01081 575 Gene3D Classic Zinc Finger 144 224 - -
Pte4g01081 575 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 558 IPR031140 -
Pte4g01081 575 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Pte4g01081 575 SMART c2h2final6 131 161 IPR013087 -
Pte4g01081 575 SMART c2h2final6 90 112 IPR013087 -
Pte4g01081 575 SMART c2h2final6 166 186 IPR013087 -
Pte4g01081 575 MobiDBLite consensus disorder prediction 227 248 - -
Pte4g01081 575 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Pte4g01081 575 MobiDBLite consensus disorder prediction 1 62 - -
Pte4g01081 575 FunFam protein indeterminate-domain 12-like 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01081 Pte-Chr4 41903722 41906085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01081 13 375 IDZ Gene Family AT1G55110 55.080 1.18e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte4g01081 zf-C2H2_jaz 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01081 K25870 - qsu:111995117 657.136