Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01076 ATGGATTATCCTCTACACCAGGCTGATCTGTTGCAAAACAGAAAAAACTTTCATGAGCAACATCAACAAGGAGAAGAAGAACCGGAAGAAGAAACATCGTGTTGTCTAACGCGTGGTGGTGGGGTTGAAGCCAATGGAAGCATGGATAGTGCAGGGATTTGCATGGTACCTCATTGCACGAATCCGCATGATTCATCTTCCAGAAAGCTTTTCATTGGAGGAGTTTCTTGGGACACAACTGAAGAGTCATTTGCCAAATACTTCAGTAAGTATGGGAAAATAGTAGACTCCGTCATAATGACCAACAAACTTACTGGAAGATCACGTGGATTCGGATTTGTAACATTTTCTGATCCAGACGTTGCTGAGGACGTTTTGGCTCAGGAGCATATCATTGATGGTAGAGTGGTTGAAGTTAAGAGAACTGTTCCCAAGGAGGATATGAAGGGCGAAGGGATCTTGAGAACAAGAAAGATTTTTGTTGGTGGAACACCACCTTCTTTCACTAGTGATGCTCTGAAGGAATATTTTTCTACGTACGGTAGCATTTCTGACTGTCGGATTATGGTAGACTGTGACACTGGCAGATCTAGAGGGTTTGGATTTGTCACTTTTGAGAATGAAGATTCAGTTCAAAAGGTTTTCGCCTTGGGAAAAAGACATGAACTTGGAGGAAAACAGGTTGAAATAAAGAGAGCTGTTCCAAAAAGAGATGGTTATGATCACAGCAACAGTTCAGCAAAGGCAAATGGTTGCTATGCCAGGGGCACAAGTAAACCTTTTGAAAAGGGTTTGATCAGAAGTCAGAATGGAGCAAAAAGAGGGAAGATAAATGGTGAATATGGCACGAGTGATGCAAATGGTATACTTGAAGGAAACTATGGTGTAAACCCTGCAATGTTTTATGGAGGTTATGGTGGATATAACTATGGATATCCATATGGCAATTCCATGTTTTGCTTTGTCAGTTATGGATTTAACTCATATGCGGTCCCTGCTAATTATGGTTTCTCGCCAGCATTCAGTAATCCTAATTGCTATGGAAGAAGTAATGGACATTGCTACAACTCTAGTCATGGATTTGAAAGGGTTGATGTTGATGATGAAATACCATCCTGA 1119 0.4111 MDYPLHQADLLQNRKNFHEQHQQGEEEPEEETSCCLTRGGGVEANGSMDSAGICMVPHCTNPHDSSSRKLFIGGVSWDTTEESFAKYFSKYGKIVDSVIMTNKLTGRSRGFGFVTFSDPDVAEDVLAQEHIIDGRVVEVKRTVPKEDMKGEGILRTRKIFVGGTPPSFTSDALKEYFSTYGSISDCRIMVDCDTGRSRGFGFVTFENEDSVQKVFALGKRHELGGKQVEIKRAVPKRDGYDHSNSSAKANGCYARGTSKPFEKGLIRSQNGAKRGKINGEYGTSDANGILEGNYGVNPAMFYGGYGGYNYGYPYGNSMFCFVSYGFNSYAVPANYGFSPAFSNPNCYGRSNGHCYNSSHGFERVDVDDEIPS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01076 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 33 350 - -
Pte4g01076 372 SMART rrm1_1 69 140 IPR000504 GO:0003723
Pte4g01076 372 SMART rrm1_1 158 231 IPR000504 GO:0003723
Pte4g01076 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 67 149 - -
Pte4g01076 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Pte4g01076 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Pte4g01076 372 SUPERFAMILY RNA-binding domain, RBD 155 253 IPR035979 GO:0003676
Pte4g01076 372 Gene3D - 155 285 IPR012677 -
Pte4g01076 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Pte4g01076 372 CDD RRM1_hnRNPA_hnRNPD_like 70 140 - -
Pte4g01076 372 MobiDBLite consensus disorder prediction 18 38 - -
Pte4g01076 372 SUPERFAMILY RNA-binding domain, RBD 61 149 IPR035979 GO:0003676
Pte4g01076 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Pte4g01076 372 Gene3D - 5 154 IPR012677 -
Pte4g01076 372 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01076 Pte-Chr4 41851023 41854193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01076 63 238 Eukaryotic Initiation Factors Gene Family AT1G71770 27.222 8.20e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01076 K12741 - qsa:O6P43_027631 316.62