Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01074 ATGGGGCATCACTCATGCTGTAACAAGCAGAAGGTTAAAAGGGGTCTATGGTCACCTGAAGAAGATGAAAAACTGATCAACTACATTTCAACTTATGGCCATGGTTGCTGGAGTTCTGTCCCAAAACTTGCTGGTCTGCAGAGGTGTGGAAAGAGCTGCAGACTTAGATGGATAAATTATCTAAGACCTGATTTAAAGCGTGGAAGTTTCTCTCCTCAAGAAGCAGCATTCATAATTGAGCTACACAGTGTTCTTGGCAATAAGTGGGCAAAGATTGCTAAGCATCTACCTGGAAGAACAGATAATGAAGTTAAGAACTTTTGGAATTCAAGCATGAAGAAGAAACTCATGACAGCTCATGAACTTTTTCATCCAGCTCTGTTATCATTTTGTGATATTCGCAGCCCTACCAATTTTATGGAAAATTTATTTGATTTCAGCGTGAATCCAAGTTTGATTCGTAACGCTCAGGATAACGAGATGTACCTGCCAACCCCATTGCCTTTTCTGCAAGGTCTTGATCATGGCGATGAACTGAGACAAGATATCAACGAGTACAATGGCAATTCTGCCCTTCTTCTTCAGACTCCATTGTCACTGCCATCATCAAGTTCATCTTCCCCCCAACATACAAGGTCATTTGAATCATTTGGCTGTATAACTCTCCAGGTTGATCCAAACCAAGAAAGTCAAAATTTTCTCTGTGAAGCTGCTTCACATTCTGTTGTTGAGAACTTCATTCAACCAAGTGGTCAAAGTTCACAAATGATGTTATCAGTTCCAAACCTCCATGACAATACATATGTTTCTGCAATGCCATTTTCACCTGAAGAACTTGATTATGTCACAAGTCTTCAGTTTTACCATCCTGGCTCTTATTCAATTGGCGATCATGAGTCACCCCACCAAATTGAAAACATGGAATCCATCATGTCAATGTTGCCATCGTTATCATCCACATCAACATCATCAACCTCGACATTATCACCCTCATCAAGTGGTCAAATCATCAACAGAGCTAGTCCTAGATCGTTCAAGCTGGGAAGCTTGAAAATTGGTACTACGCGTAATTTGAGTAACGAGGGAATAGCCGTGAATGGATATACATAA 1110 0.4054 MGHHSCCNKQKVKRGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAAFIIELHSVLGNKWAKIAKHLPGRTDNEVKNFWNSSMKKKLMTAHELFHPALLSFCDIRSPTNFMENLFDFSVNPSLIRNAQDNEMYLPTPLPFLQGLDHGDELRQDINEYNGNSALLLQTPLSLPSSSSSSPQHTRSFESFGCITLQVDPNQESQNFLCEAASHSVVENFIQPSGQSSQMMLSVPNLHDNTYVSAMPFSPEELDYVTSLQFYHPGSYSIGDHESPHQIENMESIMSMLPSLSSTSTSSTSTLSPSSSGQIINRASPRSFKLGSLKIGTTRNLSNEGIAVNGYT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01074 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte4g01074 369 Gene3D - 11 67 - -
Pte4g01074 369 MobiDBLite consensus disorder prediction 316 335 - -
Pte4g01074 369 CDD SANT 17 61 IPR001005 -
Pte4g01074 369 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte4g01074 369 FunFam Myb transcription factor 69 116 - -
Pte4g01074 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte4g01074 369 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pte4g01074 369 Gene3D - 69 116 - -
Pte4g01074 369 SMART sant 13 63 IPR001005 -
Pte4g01074 369 SMART sant 66 114 IPR001005 -
Pte4g01074 369 FunFam MYB transcription factor 6 66 - -
Pte4g01074 369 PANTHER MYB DOMAIN PROTEIN 55 1 321 - -
Pte4g01074 369 CDD SANT 69 109 IPR001005 -
Pte4g01074 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte4g01074 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte4g01074 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01074 Pte-Chr4 41834308 41835655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01074 1 118 MYB Transcription Factor Family AT3G13890 92.373 6.87e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte4g01074 Myb_DNA-binding 6.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01074 K09422 - qsa:O6P43_018330 322.398