Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01071 ATGAAAGAATATTTTGTCATGGCAGGTTTGGCACCCGATGGAGCTCAATTCGATGCTGGTCAGTATGATGCAAAAATGAAAGATTTGCTAGCAACTGATGGACAAGAGTTCTTCACATCATATGATGAGGTCTTTGACAGTTTTGATGCTATGGGATTACAAGAAAATTTGTTGAGAGGAATATATGCATATGGTTTTGAGAAGCCATCTGCAATCCAACAAAGGGGAATAGTGCCTTTTTGTAAAGGTCTTGATGTGATTCAACAGGCTCAGTCTGGAACTGGAAAGACAGCCACTTTTTGTTCTGGAATACTGCAGCAGCTTGACTATGAGTTAGTCCAGTGTCAGGCTTTGGTTTTGGCACCTACAAGGGAGCTTGCTCAGCAGATAGAGAAAGTTATGCGTGCTCTTGGTGATTATCTAGGTGTGAAGGTTCATGCCTGTGTAGGTGGTACTAGTGTCCGTGATGATCAACGTATTCTTCAAGCTGGTGTTCATGTTGTGGTTGGCACTCCTGGTCGTGTGTTTGATATGCTACGAAGGAAGTCTCTTAGGGCTGATTTTATCAAGATGTTTGTTTTGGATGAAGCAGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGATCTATGACATCTTCCAACAACTGCCAGCCAAGATTCAGGTTGGTGTGTTCTCTGCAACTATGCCACCAGAAGCCCTTGAGATTACCCGGAAGTTTATGAATAAGCCTGTGAGAATCCTGGTAAAGCGTGATGAACTGACTCTTGAAGGTATCAAGCAGTTTTACGTTAATGTGGAAAAGGAGGAATGGAAGCTTGAGACATTGTGTGATCTGTATGAGACCCTTGCAATCACTCAAAGTGTTATTTTTGTTAACACTCGACGCAAGGTGGACTGGCTTACTGACAAGATGCGGAGCAATGACCACACTGTCTCAGCCACCCATGGTGACATGGACCAGAATACTCGTGACATTATCATGCGTGAATTCCGGTCTGGCTCTTCTCGAGTCCTCATTACCACTGACCTCTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCTCTGGTAATAAACTATGACCTGCCAACCCAACCTGAAAATTACCTTCATCGCATTGGACGTAGTGGACGGTTCGGAAGAAAGGGTGTGGCAATCAACTTTGTGACTAAGGATGATGAGAGAATGCTGTCTGATATTCAGAAGTTCTATAATGTGGTAGTGGAGGAGTTGCCATCAAATGTTGCTGATCTCCTCTGA 1260 0.4389 MKEYFVMAGLAPDGAQFDAGQYDAKMKDLLATDGQEFFTSYDEVFDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRDDQRILQAGVHVVVGTPGRVFDMLRRKSLRADFIKMFVLDEADEMLSRGFKDQIYDIFQQLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVVEELPSNVADLL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01071 419 CDD DEADc_EIF4A 50 248 - -
Pte4g01071 419 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 247 IPR014001 -
Pte4g01071 419 Pfam DEAD/DEAH box helicase 71 232 IPR011545 GO:0003676|GO:0005524
Pte4g01071 419 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Pte4g01071 419 FunFam Eukaryotic initiation factor 4A-III 254 419 - -
Pte4g01071 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 400 IPR027417 -
Pte4g01071 419 CDD SF2_C_DEAD 259 389 - -
Pte4g01071 419 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 258 419 IPR001650 -
Pte4g01071 419 Gene3D - 36 254 IPR027417 -
Pte4g01071 419 Gene3D - 255 419 IPR027417 -
Pte4g01071 419 PANTHER RNA HELICASE 42 403 - -
Pte4g01071 419 SMART ultradead3 65 262 IPR014001 -
Pte4g01071 419 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Pte4g01071 419 Pfam Helicase conserved C-terminal domain 272 380 IPR001650 -
Pte4g01071 419 FunFam Eukaryotic initiation factor 4A-II 34 253 - -
Pte4g01071 419 SMART helicmild6 299 380 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01071 Pte-Chr4 41801784 41804858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01071 7 420 Eukaryotic Initiation Factors Gene Family AT1G72730 88.916 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01071 K03257 - cit:102621232 784.637