Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01059 ATGGACGGAGGTGGACAGTACAATCCTCGCACTGTAGAAGAAGTTTTCAGAGATTTAAAGGGTCGAAGAGCTGGAATTATCAAAGCCCTTACATCGGATGTTGAAGAATTCTATCAGCAATGCGATCCTGAGAAGGAAAATTTGTGCTTGTATGGATTCCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAAGAAGTTCCTCCTGAGCTTCCAGAGCCTGCATTAGGTATTAATTTTGCTAGAGACGGGATGCAGGAGAGAGATTGGTTGTCATTGGTTGCTGTGCACAGTGATGCATGGCTTCTTTCTGTTGCCTTCTATTTTGGAGCAAGATTCGGATTCGAGAAGGCAGACAGGAAGCGGCTTTTTAATATGATTAATGAACTGCCCACAATATTCGAAGTTGTGACTGGTTCTGCAAAGAAACAGACGAAGGAAAAGTCTTCAAATCACAGTGGAAGCAAACCCAAGTCCAACTCAAAAGCGAAGGGATCTGAAACTCAGGGAATGAATGCGAAAACATCACAACCAAAGGATGAAGACGAGGGAGTGGATGAAGATGAGGACGAGGAGCATGGAGAGACCTTGTGTGGGGCATGCGGTGAGCATTATGCTTCTGATGAATTCTGGATTTGTTGTGATATTTGCGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATAACCCCTGCAAGGGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAACAAGAGGGCTCGCCCCTGA 756 0.4563 MDGGGQYNPRTVEEVFRDLKGRRAGIIKALTSDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLSVAFYFGARFGFEKADRKRLFNMINELPTIFEVVTGSAKKQTKEKSSNHSGSKPKSNSKAKGSETQGMNAKTSQPKDEDEGVDEDEDEEHGETLCGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01059 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Pte4g01059 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte4g01059 251 SMART PHD_3 197 245 IPR001965 -
Pte4g01059 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Pte4g01059 251 CDD PHD_AL_plant 197 247 IPR044104 -
Pte4g01059 251 PANTHER CPG BINDING PROTEIN 8 250 IPR045104 GO:0006355|GO:0042393
Pte4g01059 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Pte4g01059 251 MobiDBLite consensus disorder prediction 154 175 - -
Pte4g01059 251 FunFam PHD finger alfin-like protein 190 246 - -
Pte4g01059 251 MobiDBLite consensus disorder prediction 141 189 - -
Pte4g01059 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Pte4g01059 251 Pfam PHD-finger 198 247 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01059 Pte-Chr4 41749861 41753319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01059 1 252 Alfin-like Transcription Factor Family AT3G42790 75.494 2.84e-129 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte4g01059 Alfin 1.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01059 K26274 - mof:131164480 457.218