Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01058 ATGTCATCCATCTCAGAAAGTTTAAGCTTGAAGATGGGGTTCTTTCCACAGCATCACCATATTACCAAGCAATTGAGTTTTCAAATCAAAGAGCAGCAATCTGCTTCAACTCAATCGTATGGTCAATCCCATCCTGAATATGACTCAGCACTACCAGTCTGCAGTGGAACTCAAGGAAAGGCTGCCAATGGCCTGGTCAAGTCCGTGATGCCTAAGGAAACTCACGATTTTCCCTTCTCTTTGACGCAACCAAGTCAGCAATCACTTATTCATCCAGCTCAAGCAATGAGTATGGCTCCTCTAGGAGAAGTGGCCCTGTCTCTCCAACTTTCTGAAGCAACAAAATGTGTCAATGCGAAACTGTACCGTGCCAACGCAATCTTGAGGCGCAGACAGTATCGGGCCAAACTTGAAGTACAGAGGAAACAAATTAAAGTTCGTAAGCCGTATATGCACGAGTCTCGACATCTTCATGCCATCAAGAGGGCTAGAGGATCTGGTGGACGGTTTCTCAACACCAAGAAGCTCCGAGAAGAGCTGAAGCCTGATGTCTCAGACTGTGGCGGAGATGTCCGCTGCTGTGTTGGGCTAAGTATTAGAAAAGACTTACTTACATCTGAAATCATTAAACTTGAGAATTACATGGAAGGTGTTTCAACCACATCTTGCTCTGATATGATAAGTGCATCTACTAGTAACGACATCTTTCACCCGCGAGCAGATTTCAGGTTCTCTGGTTTTTCTTCTCATGTTGGCAAAAGCATGCAAGACGGTTCAGTTGACATACATGCTGGCAGGAACCAACATCATTTATATGTGCATTTGTGA 828 0.4457 MSSISESLSLKMGFFPQHHHITKQLSFQIKEQQSASTQSYGQSHPEYDSALPVCSGTQGKAANGLVKSVMPKETHDFPFSLTQPSQQSLIHPAQAMSMAPLGEVALSLQLSEATKCVNAKLYRANAILRRRQYRAKLEVQRKQIKVRKPYMHESRHLHAIKRARGSGGRFLNTKKLREELKPDVSDCGGDVRCCVGLSIRKDLLTSEIIKLENYMEGVSTTSCSDMISASTSNDIFHPRADFRFSGFSSHVGKSMQDGSVDIHAGRNQHHLYVHL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01058 275 Gene3D - 112 174 - -
Pte4g01058 275 ProSiteProfiles NF-YA/HAP2 family profile. 113 173 IPR001289 GO:0003700|GO:0006355
Pte4g01058 275 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 116 170 IPR001289 GO:0003700|GO:0006355
Pte4g01058 275 PRINTS CCAAT-binding transcription factor subunit B signature 147 170 IPR001289 GO:0003700|GO:0006355
Pte4g01058 275 PRINTS CCAAT-binding transcription factor subunit B signature 116 138 IPR001289 GO:0003700|GO:0006355
Pte4g01058 275 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 248 IPR001289 GO:0003700|GO:0006355
Pte4g01058 275 SMART cbf3 110 173 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01058 Pte-Chr4 41744530 41748042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01058 5 276 CCAAT-HAP2 Transcription Factor Family AT1G72830 36.042 2.51e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte4g01058 CBFB_NFYA 4.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01058 K08064 - qsa:O6P43_018352 241.506