Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01046 ATGTGTGGTGGTGCCATCATCTCCGACTATGTTCCATTAGTTAGGAGGAATCGCCGGTTGACTGCTGATTATCTATGGCCTGTAGCAGGAAGGAATGAGTCCAGTGCATGGAAGAAGCCTCTTCCAAGAAAACACAAGTCGAAGTTCATCGATGTTGATCAAGACTTCGAAGCTGACTTCAGGGATTTTGAAGATGATGACCTTGATAATGACGATAATAACGATGTTATGGTCATTGACGCCAAGAAATTTGCTCCGTCAACCTCTAAAGCTTCCAAATCATCAACGCATCCATCTGAAGCGTCTCTGAAATGTAATGGAAAGTTTGAGAAAGCTGAGAGATCTTCAAAGAGAAAGAGGAAGAACAGTGGTCCGTACAGAGGGGTCCGGCAGCGACCATGGGGTAAATGGGCTGCAGAGATTCGAGATCCCAGAAAAGGTTGTCGGGTTTGGCTTGGAACATTCGAGACTGCAGAGGAAGCTGCAAGGGCTTATGATAATGAAGCACTTAAGATACGAGGGAAAAAAGCTAAGGTCAACTTCCCTCATCACCAGACATCATCGTATTCTGGCACCAAACAAAACTCCTCTGCCTGTGTGATTCCAAAGCAACATCCTCAACAGGAAAATCAGAGTTCTGTTCACAATGGTGAGCATCATAATCTTTGCGTCGACAAAATCATGATAAACGATCAGATGGAGGAACTTATTGGCATGCACTTACTAGAAGAGAAACCAAGCCTTAGTCTGTATGATGAAATAGAATCCTTCCTTGGAATTGGATGCAGTGAAGAAGACACAAAACCTTTTTCATCTGATAATGGTTCCATTAATTCAAGTTCAGATGATCAGGGAACTGATTTGCTAGATATTTCAGACTTTGGTCGGGAAGCAGCAGATGGGACTTGGGATGCTGCACTGGATAGCTTTCTTGGTGTTGAAGGTCATGTTACGTTGTTATAA 963 0.4341 MCGGAIISDYVPLVRRNRRLTADYLWPVAGRNESSAWKKPLPRKHKSKFIDVDQDFEADFRDFEDDDLDNDDNNDVMVIDAKKFAPSTSKASKSSTHPSEASLKCNGKFEKAERSSKRKRKNSGPYRGVRQRPWGKWAAEIRDPRKGCRVWLGTFETAEEAARAYDNEALKIRGKKAKVNFPHHQTSSYSGTKQNSSACVIPKQHPQQENQSSVHNGEHHNLCVDKIMINDQMEELIGMHLLEEKPSLSLYDEIESFLGIGCSEEDTKPFSSDNGSINSSSDDQGTDLLDISDFGREAADGTWDAALDSFLGVEGHVTLL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01046 320 PANTHER DNA-BINDING DOMAIN 93 222 IPR044808 GO:0003700|GO:0009873
Pte4g01046 320 MobiDBLite consensus disorder prediction 87 102 - -
Pte4g01046 320 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 MobiDBLite consensus disorder prediction 268 288 - -
Pte4g01046 320 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 FunFam Ethylene-responsive transcription factor 2 125 183 - -
Pte4g01046 320 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Pte4g01046 320 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 MobiDBLite consensus disorder prediction 104 119 - -
Pte4g01046 320 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 MobiDBLite consensus disorder prediction 268 287 - -
Pte4g01046 320 SUPERFAMILY DNA-binding domain 126 183 IPR016177 GO:0003677
Pte4g01046 320 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pte4g01046 320 MobiDBLite consensus disorder prediction 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01046 Pte-Chr4 41627156 41628832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01046 1 295 AP2-EREBP Transcription Factor Family AT1G53910 37.954 2.82e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte4g01046 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01046 K09286 - tcc:18596297 178.718