Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01045 ATGGGGAGGAGTCCTTGTTGTGCGAAGGAAGGTTTGAAAAGAGGAGCTTGGACGGCTACAGAAGACAAAATACTCTCAGAATACATCAAGATTCATGGTGAAGGAAAATGGAGGAACCTACCCAAAAGAGCAGGTCTCAAGAGATGTGGGAAGAGTTGCAGGCTAAGATGGTTGAATTATCTAAGACCTGACATTAAGAGAGGGAACATCACTAGTGATGAAGAAGATCTCATCATCAGACTTCACAACCTACTTGGAAACAGGTGGTCACTGATAGCTGGTCGTCTACCAGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAAGATACAGAAGAAACTCCACAAAGATTCCAAGCACAAACTTAAAGATTCCGTCTTGGATGATGTAAAGGAAAGTTCTGATAACAATCACTGCAAGCAAATAATGTTGCAATCACAAAGGGATTCAAGTGTGATCCGTCCAAAACCAACAAGGTGCACTAAAACTGTGATCAGCCATGATGATGAACTAGTAGCTGAGGCAATGGTTTCAGTCCCCATGAAATGTGATAGTATTGTCAATGAAAACAAAATGGAAATGTCTTCAAACCTGTTTCCTTCATCTGATTTCATGCTTGATTGGGATCTGGACGGAAGCTACTTGTCAGATATCCTGAACAAATGCTTCGTAGACATGGAAGATAATGGTGATGCTACAGGAAGCAAAAGCGGATTGGCATCCAATGATGACCAAACCCTTTCCTTTGAAGATTCAAAGAATGTGTTAGACTTCCAACAAATAGGGACTTCTATCGAGTCCGACTCAGACTGGTTCTGA 825 0.417 MGRSPCCAKEGLKRGAWTATEDKILSEYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTKIQKKLHKDSKHKLKDSVLDDVKESSDNNHCKQIMLQSQRDSSVIRPKPTRCTKTVISHDDELVAEAMVSVPMKCDSIVNENKMEMSSNLFPSSDFMLDWDLDGSYLSDILNKCFVDMEDNGDATGSKSGLASNDDQTLSFEDSKNVLDFQQIGTSIESDSDWF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01045 274 Gene3D - 14 66 - -
Pte4g01045 274 CDD SANT 16 61 IPR001005 -
Pte4g01045 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte4g01045 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte4g01045 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte4g01045 274 SMART sant 66 114 IPR001005 -
Pte4g01045 274 SMART sant 13 63 IPR001005 -
Pte4g01045 274 FunFam MYB-related transcription factor 13 66 - -
Pte4g01045 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte4g01045 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Pte4g01045 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte4g01045 274 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pte4g01045 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte4g01045 274 CDD SANT 71 110 IPR001005 -
Pte4g01045 274 Gene3D - 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01045 Pte-Chr4 41621844 41623055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01045 4 116 MYB Transcription Factor Family AT3G13540 76.991 1.07e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte4g01045 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01045 K09422 - qsu:112003598 264.618