Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01041 ATGTCCTCTCAAGAACAAGCACTTCTATCCCTTTTCTCTCAAGTAGCCCTATCCCTCGACGGCGCTGTCGTGGGTGTGGTCTTGGCTTTAACCGCTGCACGCTCCGTTATCAAGTTTTGCTCTAATTCGAATGCTATCCAAACACTTCGTTCCACTCCCTCTGTCTCAGTGGCAGACCTCCGGTCACTACTCGACAGTACTGATGATAAGAGTGGCGGCGAATCCGAAAAGCTTGTTATGGTACGGGGCACGGTGGAAGCGAAGGCGGTTTCTGAGAGTAGCTGGAAGAGTGGTGGAAGTAACTTCTTGGTGTCTTGCGAGTCTGGAGACAGAGCTGTTATCATACAGAGAACACAGACGTGTATCTACAATGAATGGAAGGGGCTTCTTGGTTGGACATCTGAGTTCAGAGCCTTGTTTGGTAGGTTAAGGCGGGAGCAGGAATCAATGTCATTGAGAATGGTACCATTTGTTCTTGTTGACCGAGGACATCCTTCAAATTCCGATTTGGTTGTTGTCAACATGGATGGATCTAAACACTCACTGCCCCTAGTAACCGTGTACCACCAATTGCAGCCCATAGATGCTTCTCCTTATAAATTCTTGCAAGCACTTTTTGGTCATGAATATCCGGTTGGGCTACTGGATGAGGAGAAGATTCTACCATTGGGAAAGGATATTACTGCTGTTGGCATTTGCAGCACTAAAAATGGAATGGCTGAGATCAAGTCATGCAAGGACCTTCCTTATTTCTTGTCTGATCTTACAAAAGATGAGATGATTGTAGATCTGGCTTTCAAAACTAGAGTGCTATTCTGGAGTGGGGTTGTCCTTGGTTCGCTATCATTTGGTGTTCTTGGCTATGCTATTTACAGGAACTGGAATAGATGGAAAAGCTGGAGGCAACAGAGGCAGACCCAACAAAGAGTCAACGTAGTTGATCATGACACGGACCAAATTGCATCCGAAGATGAGACGGAAGATGTGCCAGATGGTCAGTTGTGCGTTATATGTTTAATGAGGAGAAGACGCTCTGCATTTATTCCATGTGGACACCTTGTTTGCTGCCAACGGTGTGCACTATCAGTTGAACGGGAAGTAGAACCCAAATGTCCTGTTTGTCGCCAGCGAATCCAGAATTCAGTGAGGATATTTGGTTCCTGA 1164 0.4613 MSSQEQALLSLFSQVALSLDGAVVGVVLALTAARSVIKFCSNSNAIQTLRSTPSVSVADLRSLLDSTDDKSGGESEKLVMVRGTVEAKAVSESSWKSGGSNFLVSCESGDRAVIIQRTQTCIYNEWKGLLGWTSEFRALFGRLRREQESMSLRMVPFVLVDRGHPSNSDLVVVNMDGSKHSLPLVTVYHQLQPIDASPYKFLQALFGHEYPVGLLDEEKILPLGKDITAVGICSTKNGMAEIKSCKDLPYFLSDLTKDEMIVDLAFKTRVLFWSGVVLGSLSFGVLGYAIYRNWNRWKSWRQQRQTQQRVNVVDHDTDQIASEDETEDVPDGQLCVICLMRRRRSAFIPCGHLVCCQRCALSVEREVEPKCPVCRQRIQNSVRIFGS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01041 387 SUPERFAMILY RING/U-box 325 381 - -
Pte4g01041 387 CDD RING-HC_SPL2-like 330 376 - -
Pte4g01041 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 386 IPR013083 -
Pte4g01041 387 Pfam E3 Ubiquitin ligase 140 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pte4g01041 387 SMART ring_2 335 374 IPR001841 -
Pte4g01041 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Pte4g01041 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Pte4g01041 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01041 Pte-Chr4 41554433 41558554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01041 332 384 C3H Transcription Factor Family AT3G06140 39.623 1.39e-06 48.1