Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01027 ATGTCCAAGGCGTCAGACTTGGGTCAGAGCCAAAGGTACAGTAAGCCACCTGCAGACAAATCAACTTTCATACAAACATGTAACCTTTTGAGCAAATTCATGAAGGAAAAGCGATTTGCTGGAGACACAAGCAAAGGGATTGCAGCGAAATTGGAACACAGAGCAAAAACAATGAACTTGTTGACAAATAAGGACTCCTCAAATGATGCTTCTAAAGAGATTGCTGCAGCTATGGAATTTCTACCACAATTTCTTCACAACTCTTCAAACAATGAATCTGATTCTAGGGCAAAAGACCAGCTGACCATATTTTATTGTGGAAAGGTGTTAGTGTTTAATGACTTCTCAGCTGAAAATGCCACTGAGATAATGGAAATGGCAACCAAGCTGAGCTCTAACAATACTACTGAGGACAAAACTGAAACCAGTGCTCCTGTTCCCCCTTCTGAAGCCAAGAACATAGCTCTGCCTGCAGCCAATAATATAAACACCGAACAAGCAGATTTGAAAATTGCAAGGAGAGCTTCCCTTCATAAATTCTTTGAGAAAAGGAAAGAAAGGGTCACAGCGAGAGGACCATACCCATTGAATAACGCAGTGATAACTTCTTCCAAGCCAGCTGGTGAATCCAGTTCAATACCTTCAGATGCAGACCTGGATCATGGTCAATCCTCTAAAGAGCTTGATCTCAAGCTGTAG 699 0.4177 MSKASDLGQSQRYSKPPADKSTFIQTCNLLSKFMKEKRFAGDTSKGIAAKLEHRAKTMNLLTNKDSSNDASKEIAAAMEFLPQFLHNSSNNESDSRAKDQLTIFYCGKVLVFNDFSAENATEIMEMATKLSSNNTTEDKTETSAPVPPSEAKNIALPAANNINTEQADLKIARRASLHKFFEKRKERVTARGPYPLNNAVITSSKPAGESSSIPSDADLDHGQSSKELDLKL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01027 232 SMART tify_2 94 129 IPR010399 -
Pte4g01027 232 Pfam Jas motif 171 194 IPR018467 -
Pte4g01027 232 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 208 IPR040390 -
Pte4g01027 232 Pfam tify domain 97 127 IPR010399 -
Pte4g01027 232 ProSiteProfiles Tify domain profile. 94 129 IPR010399 -
Pte4g01027 232 MobiDBLite consensus disorder prediction 131 151 - -
Pte4g01027 232 MobiDBLite consensus disorder prediction 192 232 - -
Pte4g01027 232 MobiDBLite consensus disorder prediction 131 147 - -
Pte4g01027 232 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01027 Pte-Chr4 41443646 41446042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01027 3 206 Tify Gene Family AT1G19180 31.224 1.00e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte4g01027 tify 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01027 K13464 - qsa:O6P43_027520 186.808