Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01019 ATGGCTACTACTCAAGCTGCTCCACCACGCCAGCTGTCGCAGAAGGAGGCAGACATTCAGATGATGTTGGCTGCTGAATGTCATCTCGGTACTAAGAACTGTGACTTTCAGATGGAACGTTATGTATTCAAGCGCCGCAATGATGGTATCTATATTATCAATCTTGGAAAGACGTGGGAAAAGCTTCAACTTGCTGCTAGAGTGATTGTTGCTATTGAAAATCCCCAGGACATTATCGTTCAGTCTGCAAGGCCTTATGGTCAGAGAGCAGTTTTGAAGTTTGCTCAATACACTGGTTGTCATGCCATCGCTGGAAGGCATACACCTGGTACATTCACAAATCAGTTGCAGACTTCTTTCAGTGAGCCTAGGCTTCTGATTTTGACTGACCCTAGAACTGATCACCAGCCAATTAAGGAAGCTGCACTCGGAAACATCCCCACAATTGCTTTCTGTGATACTGATTCTCCAATGCGGTATGTTGATATTGGAATACCATCTAATAACAAGGGAAGGCACAGTATTGGATGTCTCTTTTGGCTGTTGGCCAGAATGGTTCTTCAAATGCGTGGTATTATTCGTGCTGGGCAAAAGTGGGATGTGATGGTTGATCTATTTTTCTATAGAGAGCCTGAGGAGGCCAAGCAGCAAGAGGAAGAACAAGCGGCTCCTATTCAAGACTATGTCACTGACTTTGGTGCTACTGCAGTTTTAGATGGACAATGGGGCGCTCCCTCAGATGCCCAATGGCCTGAGGCTGTACCGCAAATTCCAGTTGCTGCGGGTGCTACCTGGGCCCCAGAGCCAGCAGTTGCTGGAGGAGACTGGGAAGCAGTTGCAGCTCCTGCACAAATTCCTGCACCAGCGGAGCCTGTTGGTAATTGGGAATGA 891 0.4747 MATTQAAPPRQLSQKEADIQMMLAAECHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGCHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPSNNKGRHSIGCLFWLLARMVLQMRGIIRAGQKWDVMVDLFFYREPEEAKQQEEEQAAPIQDYVTDFGATAVLDGQWGAPSDAQWPEAVPQIPVAAGATWAPEPAVAGGDWEAVAAPAQIPAPAEPVGNWE* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01019 296 Gene3D - 18 224 - -
Pte4g01019 296 NCBIfam 30S ribosomal protein S2 14 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte4g01019 296 FunFam 40S ribosomal protein SA 18 224 - -
Pte4g01019 296 Hamap 40S ribosomal protein SA [rps-0]. 6 279 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pte4g01019 296 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
Pte4g01019 296 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 PANTHER 40S RIBOSOMAL PROTEIN SA 9 284 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte4g01019 296 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 Pfam Ribosomal protein S2 121 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte4g01019 296 Pfam Ribosomal protein S2 22 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01019 Pte-Chr4 41359445 41362191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01019 6 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.000 2.21e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01019 K02998 - gmx:548014 468.388