Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01018 ATGTGTGGAGGAGCTATCATCTCCGACTTCATTCCAATTGGTTTGAGGTGTAGCCGTAAGGTGACTGCTGAACACCTCAGGCCCGAATTGAATAAATCCAGTTCAGGGAAGGACGTCATTGTTTTTGGTGACGATTTTGAAGCTGACTTCAGAAATTTCAAGGATGACTCAGAAATTGATGAGGATGATGACCATGCCCTGGGTTATTCTAAATCATTTGCTTTCTCCGCTCCTTCGAAGGCAAAAGCTACGAAGGGCTCCACTGCTGTCAAAACTACAAAATCCAATGAGCAAACTGAGAATTATGCTAAGAGGAAGAGAAAGAATCAGTATAGAGGAATCAGGCAGCGTCCATGGGGCAAATGGGCAGCTGAGATCCGGGATCCAAGAAAGGGAGTCCGTGTCTGGCTTGGCACTTACAGTACTGCAGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCGCGAAGAATTCGTGGCAAGAAAGCTAAGTTGAACTTTCCTGAAGAGAATACATCTAGTCCACCAATGCTTCTTAACAGCAAAATCCCTAGAAAGCCACTTCCCAGTGCAAGCCAAAACATTCGTGTCAACAGTCTGAATGATGACTATTACAGTGACATGGGCCTGATGGAAGTGAAGCCACTTGTTGGGGATGCTGATTATCCAAAATCCTTCCCTGGTCTAGGCAGTGATGGGATGTCATCCTTCACTTCTTCTGATGGCATTCTGCCCTATTTTTGTTCTGATCAGGGAAGTAACTCATTTGATTGTTCAGACTTCTCCTGGGTTGCACAGAGTTCAAAGACTCCGGAAATATCCTCCGTGCTTTGTGCTTCACTGGCAAATGAAATCCAGCATGCTGAAGATGTAAACCCAGATAAGGAGTTGAAACCTAAGTTCGAGGATGTCACACCTGGAAAAGAAAATCCTGAGAAAACACTTTCTGATGAGCTCTTAGGCATGGAGCCCTTTGAGATGCCATCTCTTGAAATCGACTGGGATGAGGCTTCACTAAATATCCTCTTGAACGGAGGCACTCAAAATGGAGAACTTACAGACTTTTGGAGCTTCGATCAGAATGTTTCTTCCCTGGGAGGAGCTTTCTGA 1107 0.4499 MCGGAIISDFIPIGLRCSRKVTAEHLRPELNKSSSGKDVIVFGDDFEADFRNFKDDSEIDEDDDHALGYSKSFAFSAPSKAKATKGSTAVKTTKSNEQTENYAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYSTAEEAARAYDAEARRIRGKKAKLNFPEENTSSPPMLLNSKIPRKPLPSASQNIRVNSLNDDYYSDMGLMEVKPLVGDADYPKSFPGLGSDGMSSFTSSDGILPYFCSDQGSNSFDCSDFSWVAQSSKTPEISSVLCASLANEIQHAEDVNPDKELKPKFEDVTPGKENPEKTLSDELLGMEPFEMPSLEIDWDEASLNILLNGGTQNGELTDFWSFDQNVSSLGGAF* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01018 368 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Pte4g01018 368 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Pte4g01018 368 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 CDD AP2 110 168 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 MobiDBLite consensus disorder prediction 84 112 - -
Pte4g01018 368 MobiDBLite consensus disorder prediction 165 189 - -
Pte4g01018 368 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 PANTHER DNA-BINDING DOMAIN 79 261 IPR044808 GO:0003700|GO:0009873
Pte4g01018 368 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Pte4g01018 368 FunFam Ethylene-responsive transcription factor 2 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01018 Pte-Chr4 41355375 41358724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01018 1 298 AP2-EREBP Transcription Factor Family AT3G14230 48.802 1.66e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte4g01018 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01018 K09286 - cave:132186622 323.553