Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01016 ATGGAAAGCTCTCACTTTCCAAAATCAAAGACGTTGAAACTTGGCTCGGCACCACCATTGCTGACCAAGAAACTTGCATCGAAGCTTTCAAAGAGTCGAACCCTTCATCTACATGTGATTTTGCATGGTCTGAAGACAGCTATGGAAAACTCAACTGAATTTTCTAGCAACAGTTTGGCCATTGTGACTAAAGTTCTGAGTTTGCTCACGGACTTCAACATCCCTATCCATCAGAAACTACTCGGGCTTGGAGGATCCTATTCCGATTTCTCTGAATGGGTTGGCCGGATAGAGAGAAGATTGCTGCAGGAGAAGGTACTTCTTCCAAAGATGTGCATGTCACAGTGGCTAAAGATGGCAGTGGTAACTATCGAACTGTCAATGAAGCTGTGGCAACTGGCAAGGGTGCCTAAGAAGAGTGCCACTATATGTCCGTATGTGATCTATGTGAAAGAAGGCAAATATGAAGAGAATGTAGTGTTGGATAAGAACAAGTGGAATGTGATGCTACGGAGTTCACTGCAAAAAATTTGGTACAATGGCTGA 546 0.4359 MESSHFPKSKTLKLGSAPPLLTKKLASKLSKSRTLHLHVILHGLKTAMENSTEFSSNSLAIVTKVLSLLTDFNIPIHQKLLGLGGSYSDFSEWVGRIERRLLQEKVLLPKMCMSQWLKMAVVTIELSMKLWQLARVPKKSATICPYVIYVKEGKYEENVVLDKNKWNVMLRSSLQKIWYNG* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01016 181 Gene3D - 133 178 IPR012334 -
Pte4g01016 181 SUPERFAMILY Pectin lyase-like 145 172 IPR011050 -
Pte4g01016 181 PANTHER PECTINESTERASE 24 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01016 Pte-Chr4 41341828 41342901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01016 39 170 Carbohydrate Esterase AT1G53840 45.185 3.91e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01016 - - qsa:O6P43_027479 139.043