Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01015 ATGAGCAAGCTAAAACAACTCTATGCTATTGTTTCAGATACCACCAAACACATTCCCATGTCTAGAAAATACAAGAAGCTCATCTTGGTTATTTCTGCTACCTTATTTCTTGTTGCTGCCATTATCGGCATTGTTGCTGGTGTGAATTCTCACAACAAGTCAAGTAATAATGCCACATCCATGTCTTCGCATGCCATAGTCAAAAGCTCATGTAGCAGCACATTATACCCTGAATTATGCTTCTCTGTCATAGCCAATACTACAGCAGTAACCCAGTTCAAAATCACAAGCCAAAAGGATGTGATAGAATTATCTCTGAACCTAACCACTGAAGCAGTAAAGCACAACTATTTCAATATCAAGGAGCTTCTACTGACAAGAAAAAACTTGACAGAACGTGAGCAGACCGCTCTTCATGATTGCTTAGAAACCATAGATGAAACCCTTGAGGAGCTTCAGAAAGCTGAGGAAGATCTGAATGTGTATCCGAACAAGAAATCCTTGTACCAACATGCTGATGATCTTAAAACCGTAATAAGTTCTGCAATAACAAACCAAGTAACTTGCTTGGACGGTTTCTCATACGATGCAGCTGATAAACATGTCAGGGAAGCACTGCAACAAGGTGAGGTACATGTAGAGCATATGTGCAGCAATGCTTTGGCTATGATCAAGAATATGACTGACACTGATATAGCCAATTACGAGACAACCAAGTTGGCAGCCACGAACGGCCGGAAGCTTAAGGAAAATCATGGGGATGAAATTAAGTGGCCGGAGTGGTTATCAGCAGGAGATAGGAGGCTTTTGCAATCATCTTCAGTTACACCTGATGCTGTGGTGGCTACAGATGGCACTGGTGATTTCAGGACAGTGTCAGAAGCAGTGAATGCTGCTCCTCAGAAGAGTAAAAAGAGATTCATCATAAGGATCAAAGCAGGTGTATACAGAGAAAATGTAGAGGTAACAAAGAAAATGATTAATCTTATGTTCATTGGGGATGGAAGAACAGATACAATTATCACAGGTAGCAGAAATGTTGCTGATGGCAGCACAACCTTCCATTCTGCTACAGTAGCTGTTGCTGGTGAAGGATTCCTTGCGCGGGACATAACATTTCAAAACACAGCAGGCCCCTCCAAGCACCAAGCAGTTGCACTACGCGTAGGTGCTGACTTCGCAGCCTTTCATCATTGTGACTTTCTAGGCTACCAAGACACACTGTATGTTCACAACAACCGCCAATTCTTCGTGAGCTGCCTTATAACAGGCACAGTGGATTTCATCTTCGGCAATGCAGCTGCTGTCTTCCAAGACTGTGACATCCATGCACGTCTTCCGGGTCCGGGCCAAAAGAACATGGTCACTGCACAAGGCCGTGTAGACCCGAATCAAAACACTGGCATTGTGATTCAGAAATCGAGGATAGGTGCCACTAAGGACTTGGAATTGGTTAAAGAAGATTTCCCCACTTATCTTGGTAGGCCATGGAAGCAATATTCAAGGACAGTCATCATGCAGACGAATATAGGTGATGTGATACAGCAAGCGGGGTGGCATGAATGGAATGGTGATTTTGCATTGAACACTTCTTTCTATGCAGAGTATGAAAACAATGGACCAGGAGCGGATACCTCAAAGAGGGTCAGCTGGAAAGGGTTCAAGGTGATAACGAATGCAACTGAGGCTGAGGCTTACACTCCTAAGAATTTCATTGCCGGTGACACTTGGTTGAGTTCAACTGGTTTTCCATTCTCTCTTGGAATATAA 1770 0.4345 MSKLKQLYAIVSDTTKHIPMSRKYKKLILVISATLFLVAAIIGIVAGVNSHNKSSNNATSMSSHAIVKSSCSSTLYPELCFSVIANTTAVTQFKITSQKDVIELSLNLTTEAVKHNYFNIKELLLTRKNLTEREQTALHDCLETIDETLEELQKAEEDLNVYPNKKSLYQHADDLKTVISSAITNQVTCLDGFSYDAADKHVREALQQGEVHVEHMCSNALAMIKNMTDTDIANYETTKLAATNGRKLKENHGDEIKWPEWLSAGDRRLLQSSSVTPDAVVATDGTGDFRTVSEAVNAAPQKSKKRFIIRIKAGVYRENVEVTKKMINLMFIGDGRTDTIITGSRNVADGSTTFHSATVAVAGEGFLARDITFQNTAGPSKHQAVALRVGADFAAFHHCDFLGYQDTLYVHNNRQFFVSCLITGTVDFIFGNAAAVFQDCDIHARLPGPGQKNMVTAQGRVDPNQNTGIVIQKSRIGATKDLELVKEDFPTYLGRPWKQYSRTVIMQTNIGDVIQQAGWHEWNGDFALNTSFYAEYENNGPGADTSKRVSWKGFKVITNATEAEAYTPKNFIAGDTWLSSTGFPFSLGI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01015 589 SUPERFAMILY Pectin lyase-like 275 588 IPR011050 -
Pte4g01015 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 228 IPR035513 -
Pte4g01015 589 PANTHER PECTINESTERASE 33 579 - -
Pte4g01015 589 CDD PMEI-like_3 69 228 - -
Pte4g01015 589 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Pte4g01015 589 SMART PMEI_2 62 223 IPR006501 GO:0004857
Pte4g01015 589 Gene3D - 272 589 IPR012334 -
Pte4g01015 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 228 IPR035513 -
Pte4g01015 589 Coils Coil 138 165 - -
Pte4g01015 589 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Pte4g01015 589 FunFam Pectinesterase 272 589 - -
Pte4g01015 589 Pfam Plant invertase/pectin methylesterase inhibitor 66 223 IPR006501 GO:0004857
Pte4g01015 589 NCBIfam pectinesterase inhibitor domain 57 227 IPR006501 GO:0004857
Pte4g01015 589 Pfam Pectinesterase 278 575 IPR000070 GO:0030599|GO:0042545
Pte4g01015 589 FunFam Pectinesterase 63 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01015 Pte-Chr4 41319263 41322587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01015 22 590 Carbohydrate Esterase AT3G14310 67.295 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01015 K01051 - cave:132186541 842.417