Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01014 ATGGATGACTCAAATGATAGTCCTGGTATATTGTTAACTGGCAAGATTATGGTAGCTGTTGTATTAGTACTCTTCTTGGTAGTTGTGTTCATCCTTTGTTTGCATCTTTATGCCAAATGGTTTTGGTGGCTTCTTGATGATGCCGATCGTGATCCTTTTCAAGGCCGTAGCCGCCGACATAGACGCAGGATTGTCTTCACCCCAGGTCAAGACCTTGCTATCTCCACCATTCATGGAAGAGGGCTTGAACCTGCTATCCTCAAGTCCATACCTGTATTGGTATACAATGAAGCTGAGTTCAATGGTTTGGAATGTGCCGTTTGCCTCTCTGAGCTTGAAAATGGGGAAAAGGCAAGGCTGCTACCTAAATGCAATCATGGGTTTCATGTTGATTGCATAGACATGTGGTTTCAATCACATTCAACCTGCCCACTTTGTAGGAATCCAGTTGCACCTGCTTCTTCAAATTCTACTGCTTTTACAGGTGCTAATGTTGGGGCACAGAATATTCAAATGCCAGAAGAGAATATGGCTTCTGAATCACCCATATTCCCTACAAATGTGTTAGTTTGGGGCAACCAAACTCAGGTCAGTTCTGCTGGTGCTTGTCTCGAGGAGGGTTCTTCTTCCCAAACAACTGGTGCCTCTTCTTCATCTTCAACTTCTATGTCAGTTGGTAATGGGGTTAGACCCCATGGAATGCTGGTAATTGATATTCCAAGTGAGATGATCAATCCACCATCTCCATCCCCTTCTACTGCAGCCAGATTTGCTGATGATGAGCTCAAGTCACCAATGACAACTAGATTGAGATCATTGAAAAGGCTATTGAGCAGGGATAAGAAATCAAGTCCATGTAGTCCTAGTTCCGTGGATTTGGAACAAGTGACGAGAGGACAGAACTAG 906 0.4393 MDDSNDSPGILLTGKIMVAVVLVLFLVVVFILCLHLYAKWFWWLLDDADRDPFQGRSRRHRRRIVFTPGQDLAISTIHGRGLEPAILKSIPVLVYNEAEFNGLECAVCLSELENGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVAPASSNSTAFTGANVGAQNIQMPEENMASESPIFPTNVLVWGNQTQVSSAGACLEEGSSSQTTGASSSSSTSMSVGNGVRPHGMLVIDIPSEMINPPSPSPSTAARFADDELKSPMTTRLRSLKRLLSRDKKSSPCSPSSVDLEQVTRGQN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01014 301 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pte4g01014 301 CDD RING-H2_EL5-like 104 147 - -
Pte4g01014 301 SMART ring_2 105 146 IPR001841 -
Pte4g01014 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 153 IPR013083 -
Pte4g01014 301 MobiDBLite consensus disorder prediction 262 281 - -
Pte4g01014 301 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 154 IPR044675 -
Pte4g01014 301 MobiDBLite consensus disorder prediction 282 301 - -
Pte4g01014 301 Pfam Ring finger domain 104 147 IPR001841 -
Pte4g01014 301 MobiDBLite consensus disorder prediction 201 301 - -
Pte4g01014 301 SUPERFAMILY RING/U-box 91 153 - -
Pte4g01014 301 FunFam RING-H2 finger protein ATL3 73 152 - -
Pte4g01014 301 MobiDBLite consensus disorder prediction 201 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01014 Pte-Chr4 41304515 41306719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01014 1 284 C3H Transcription Factor Family AT1G53820 40.063 2.72e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01014 - - qsa:O6P43_027473 343.199