Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01007 ATGATGATTCAGAAGAGAACAACTCCATATGCTCTTCCAACTTCTGGGGTGTCTAGTACGAGGATGACACATGGAGAAGCTATTAAAACATTAATGTCAACAAGACACTCGTCTCTGCTGATTTGCTTGAAGTACTTGTTGTCACTGAAAGTAACGATCTTCGTCATAATAACAACCTTAATCCTATCTCGGTTTGCTGTTTCTGTTACTGCCGTCTGTAACCAACTTGACCAGGAGTCACTCTCGTCATTTTCTGCCAATATATCAATATCCCCGTCTTATTCTCCCCTCAATTGGTCATCTTCTGTTGATTGCTGCGTTTGGGAAGGCATTACTTGTGAAGAGGGAGGGGCTGGTAGTGACCAGAGGGTAATTCGTCTATGGCTACCATCTAGAAGTCTCAATGGATATCTCTCACCATCTCTTGCAAACCTCAGCCATCTGTCTCAACTAAATTTATCCCACAACAGATTCTCTGGGTTTCTTCGAATCGAATCCTTCTCGCTCCTTAATCAGCTTCAGATTCTTGATTTGAGCTACAATCGTTTCTCTGGGGAGCTACCACCCCTTGAAAACAGCACCAGCATCATTGAGGTGGTTGATTTGTCAAGCAACTTGTTCCAAGGGAATCTTCCGTCTTCCTTCCTTCAGCTTCTATCAGATGCAGCAGCAAGAGGCACTTTAACAACTTTCAATGTAAGCAACAACAGTCTTACAGGTCAAATCCCTGTCTCTAGCTTTTGCAGTAATGGCAATAATTCCTCGTCTCTCAGATTCTTAGATCTTTCCTACAATAAGTTCAGCGGTCCAATAATACCTGGACTTGGAGAATGTTCCAAGCTGGAGGTTTTCAAAGCTGGCTTTAATTCTCTCTCTGGACCAATTCCTGGTGATATATATGGTGTTGTTTCACTTCAAGAACTTTCTATACCAGCAAATAAATTATTAGGAAGCATTGATGATAGCATTACAGGACTTACAAACCTTACAGTCCTCGAGCTTTACTCCAACTCTTTGTATGGCCCTATCCCAAAAGATATTGGCAAGCTTTCCAAATTGGAGCATCTGCTTCTTCACATCAATAACCTGACGGGGATTCTGCAACCATCTCTTATGAATTGCAGCAATCTTGCTACGTTGAATTTAAGGGTCAACCACTTGGTAGGAGATCTCTCAGAATTCAATTTCTCCAATTTCCTCCGGCTCACCACACTTGATCTTGGTAACAATAACTTTACTGGTAACATACCGCAAACCCTTTATGCATGCAGCTCACTAACTGCTGTAAGACTGGCTGCCAATAATCTGGAAGGACAAATCAAATCGGACATTCTTGCGTTGAAGTCTCTTTCTTTCCTATCAATTTCTACCAATAATTTAAGTAACTTCAGTGGGGCTGTCATTATTCTTCAGCAACTCAAGAACCTCAGCACTCTTGTTCTCTCCAAGAATTTCTTTAAGGAACCAATCCCAGACCATGAACAAGCAGTTGCACCAGATGGATTCCAAAGACTGCAAATTCTTGCTCTGGGGGGCTGCAATTTTACAGGCCAAGTGCCCCGATGGCTTGTAAAGCTCAAGAAACTTGAGGTGTTAGATCTTTCAGTTAATCAACTCACTGACTCCATTCCTGGTTGGTTTAGTTCTCTGCCGCAGCTCTTCTATTTAGACTTGTCTAATAACCAGCTTACTGGAGAGTTCCCACTGGATCTTACAAGATTGCCGTCACTTACATCACAAGAAGCTGCTAAGAAAATAGAACGGACGAATCTAGAGTTGCCTGTCTTTGTTGTGCCCAATAACGCTACCCTGCAGCAGTACAATCAGCTGTCCAACCTTCCACCAGCAATATACCTGAGAAACAACAGTCTTGATGGCAGTATCCCTGTAGATGTTGACCAACTGAAACTGATTCATGTGCTTGATCTCAGTCTCAATAATTTTTCCGGCAGTATTCCTGATCAAATTTCTCGTCTCACTGACTTGGAGAGGTTGGACCTATCCCAGAATAACTTATCCGGGCAAATCCCTGTTTCACTGAAAGCTCTTAATTTCTTGTCTTATTTTAGTGTGTCATACAATAATCTTGATGGAGAGATACCAACTGGAGGTCAATTTGATACTTTCGCTAATTCTAGCTTTGAAGGAAACCCTCTGTTGTGTGGCTCAGCAGTGCAGCGGTCTTGCTTTAATCCACAAAGTGACACAACTTTCCGTCACCGCCAAAACAGAAAACTCATTATTACAGTTATCATTGCTGCCTGTTTTGGCACTGTTTTCATTGTGATTATAGTAGCGTTGTTTATACTGTCCAAGAGGAGGATAATTCCTGGAGGAGAACCTGACGGTGTTGATTTGGATACAATTTCAATCTACTCCAACACTGCTGAAACTGACAAGGATGCCAGTCTAGTAGTGATGTTTCCAAATAAAATGAGTGGCATCAAGGATCTTACCATAGCTGAAATCTTGAAAGCAACTGAAAATTTCAGTCAAGCAAATATCGTAGGTTGTGGGGGTTTTGGTTTAGTCTATAAAGCAACATTAGCAGATGGAACTAAGTTGGCAGTAAAAAGATTGTCTGGAGATATGGGTCTAATGGAAAGGGAATTTAAGGCAGAGGTTGAGGCTTTGTCAACTGCTCAACATGAGAATTTGGTTTCATTACAGGGATATTGCCTGCATGACGGCTTTCGGCTACTAATGTATACTTACATGGAGAATGGAAGTCTGGATTACTGGTTGCATGAAAAGACTGATGGTCCATCCCAGCTAGATTGGCCAACTAGACTGAAGATTGCGCAGGGAGCAAGTCGTGGTCTGGCTTATATGCACCAAATATGCGAGCCACACATTGTTCATCGTGATATCAAGTCAAGCAACATTCTACTTAATGGAAAATTCGAAGCACATGTCGCGGATTTTGGATTATCCCGCTTGATTCTTCCTTATCACACACATGTTACCACTGAACTTGTAGGTACATTAGGCTATATACCTCCAGAGTATGGACAGGCATGGGTAGCCACTTTGCGGGGAGACATGTATAGTTTCGGAGTTGTCATGCTTGAGCTGCTCACAGGGAAGAGGCCAGTTGATGTAACCAAGCCAAAGATGTCTAGAGAATTGGTTGGATGGGTGCATCATATGAGAAATGAGGGGAAACAAGACCAAATCTTTGACCCCATCTTGAGAGGCAAAGGCTTTGAAGAGCAGATGTCGCAGGTGCTAGATGTAGCATGCATGTGCGTCAGCTATAATCCCTTCAAGAGACCAGCCATCAAAGAAGTCGTGGATTGGCTGCATAATGTAGGAACAGTCTACCAAAATCAAAATAAAGATTAG 3345 0.4233 MMIQKRTTPYALPTSGVSSTRMTHGEAIKTLMSTRHSSLLICLKYLLSLKVTIFVIITTLILSRFAVSVTAVCNQLDQESLSSFSANISISPSYSPLNWSSSVDCCVWEGITCEEGGAGSDQRVIRLWLPSRSLNGYLSPSLANLSHLSQLNLSHNRFSGFLRIESFSLLNQLQILDLSYNRFSGELPPLENSTSIIEVVDLSSNLFQGNLPSSFLQLLSDAAARGTLTTFNVSNNSLTGQIPVSSFCSNGNNSSSLRFLDLSYNKFSGPIIPGLGECSKLEVFKAGFNSLSGPIPGDIYGVVSLQELSIPANKLLGSIDDSITGLTNLTVLELYSNSLYGPIPKDIGKLSKLEHLLLHINNLTGILQPSLMNCSNLATLNLRVNHLVGDLSEFNFSNFLRLTTLDLGNNNFTGNIPQTLYACSSLTAVRLAANNLEGQIKSDILALKSLSFLSISTNNLSNFSGAVIILQQLKNLSTLVLSKNFFKEPIPDHEQAVAPDGFQRLQILALGGCNFTGQVPRWLVKLKKLEVLDLSVNQLTDSIPGWFSSLPQLFYLDLSNNQLTGEFPLDLTRLPSLTSQEAAKKIERTNLELPVFVVPNNATLQQYNQLSNLPPAIYLRNNSLDGSIPVDVDQLKLIHVLDLSLNNFSGSIPDQISRLTDLERLDLSQNNLSGQIPVSLKALNFLSYFSVSYNNLDGEIPTGGQFDTFANSSFEGNPLLCGSAVQRSCFNPQSDTTFRHRQNRKLIITVIIAACFGTVFIVIIVALFILSKRRIIPGGEPDGVDLDTISIYSNTAETDKDASLVVMFPNKMSGIKDLTIAEILKATENFSQANIVGCGGFGLVYKATLADGTKLAVKRLSGDMGLMEREFKAEVEALSTAQHENLVSLQGYCLHDGFRLLMYTYMENGSLDYWLHEKTDGPSQLDWPTRLKIAQGASRGLAYMHQICEPHIVHRDIKSSNILLNGKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVMLELLTGKRPVDVTKPKMSRELVGWVHHMRNEGKQDQIFDPILRGKGFEEQMSQVLDVACMCVSYNPFKRPAIKEVVDWLHNVGTVYQNQNKD* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01007 1114 Gene3D Phosphorylase Kinase; domain 1 790 905 - -
Pte4g01007 1114 PRINTS Leucine-rich repeat signature 659 672 - -
Pte4g01007 1114 PRINTS Leucine-rich repeat signature 553 566 - -
Pte4g01007 1114 SMART LRR_typ_2 526 549 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 326 350 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 399 423 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 447 470 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 550 581 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 170 194 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 145 169 IPR003591 -
Pte4g01007 1114 SMART LRR_typ_2 659 683 IPR003591 -
Pte4g01007 1114 Gene3D Transferase(Phosphotransferase) domain 1 906 1114 - -
Pte4g01007 1114 Gene3D Ribonuclease Inhibitor 466 737 IPR032675 -
Pte4g01007 1114 Pfam Leucine rich repeat N-terminal domain 77 113 IPR013210 -
Pte4g01007 1114 SUPERFAMILY L domain-like 258 718 - -
Pte4g01007 1114 ProSiteProfiles Protein kinase domain profile. 830 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g01007 1114 Gene3D Ribonuclease Inhibitor 74 366 IPR032675 -
Pte4g01007 1114 SUPERFAMILY L domain-like 72 317 - -
Pte4g01007 1114 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 325 1102 - -
Pte4g01007 1114 ProSitePatterns Protein kinases ATP-binding region signature. 836 858 IPR017441 GO:0005524
Pte4g01007 1114 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Pte4g01007 1114 Pfam Protein kinase domain 831 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g01007 1114 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515
Pte4g01007 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672|GO:0006468
Pte4g01007 1114 FunFam Tyrosine-sulfated glycopeptide receptor 1 396 734 - -
Pte4g01007 1114 SUPERFAMILY Protein kinase-like (PK-like) 813 1101 IPR011009 -
Pte4g01007 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 296 391 - -
Pte4g01007 1114 FunFam Leucine-rich repeat receptor-like protein kinase 906 1112 - -
Pte4g01007 1114 Gene3D Ribonuclease Inhibitor 367 465 IPR032675 -
Pte4g01007 1114 FunFam Somatic embryogenesis receptor kinase 1 805 905 - -
Pte4g01007 1114 SMART serkin_6 830 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01007 Pte-Chr4 41224586 41228374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01007 47 766 Miscellaneous Gene Families AT1G17240 50.820 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pte4g01007 Pkinase 8.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01007 - - pcin:129290895 1476.46