Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01000 ATGAATTTACGTTCACTTAAGAAGTCTTTAGGAGTGAACAGCATTGACGAAGTATTGGAAATACTTGGAGATGGATTCAGATTTCAGCCGACTGATGAGGAGCTCATGAATTTCTTGAAGTACAAGATTGGTGGATCTGAGTCGAAGGTTGAGATGATCCCTGTTGTTGATCTTAACAAGTTTGAACCTTGGGATTTACCTGATGTGATTTCAGGGAGGTCTTGTTTGAATTCAAAACACAAAGAATGGTTTTGTTTCTATTCTCCTCATTACAAATACAAAAATAGTAAAAGGTGTGACAGATTAACTGTTGCGGGTTACTGGAAACCAACTGGTAAGGATCGTCCAATTAAGATTTCAGGCAGGAACATTGGTTGCAAGAAGACTCTGGTTTTCTACACAGGTCGTGTTCGTGGTGGCATCAGGACCGACTGGGTTATCCATGAATATCACAGAAAAGCACGGCACTGTGATCGGAGTGATTTGGTTATATGTCGCCTGATGAACAACCAAGAGAGACAAATACAAGGGACTCATGAGTCTAATGTTAATGAGGAAAACACTGACAGCACTTTGACTTGTGACACTGCAAATGAAACTACACAAAATAAAATGTTAGAGGTTAGAGCCATTATGTTGTGGACATCTGATACAAGATATTTGTCTTGTACCAGACCTTACTAA 684 0.3947 MNLRSLKKSLGVNSIDEVLEILGDGFRFQPTDEELMNFLKYKIGGSESKVEMIPVVDLNKFEPWDLPDVISGRSCLNSKHKEWFCFYSPHYKYKNSKRCDRLTVAGYWKPTGKDRPIKISGRNIGCKKTLVFYTGRVRGGIRTDWVIHEYHRKARHCDRSDLVICRLMNNQERQIQGTHESNVNEENTDSTLTCDTANETTQNKMLEVRAIMLWTSDTRYLSCTRPY* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01000 227 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 195 - -
Pte4g01000 227 ProSiteProfiles NAC domain profile. 22 170 IPR003441 GO:0003677|GO:0006355
Pte4g01000 227 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Pte4g01000 227 SUPERFAMILY NAC domain 22 168 IPR036093 GO:0003677|GO:0006355
Pte4g01000 227 Gene3D NAC domain 31 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01000 Pte-Chr4 41179802 41180969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01000 22 176 NAC Transcription Factor Family AT3G17730 46.746 1.17e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte4g01000 NAM 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01000 - - gsj:114419327 164.851