Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00996 ATGTCATCAACAATCTTCGACTTACGATCATTTCCACCAGGATTTGGATTCCATCCAAAAGATGAAGTGCTTGTCAACTACTACCTCAAGAATAAGTTACTTGGAAACGATGACTTGGTCAGTCATATACCACAAGTTGATATATGCAATTTTGAACCTTGGCAATTACCAGCATTGTCAGTGATAAAGTCAAATGATCCACCATGGTTTTTCTTCAGTTTCCGCAATTACAAGTACACAAATAGTATTAGGTATGGTAGGAAAACCGAGTGTGGTTTCTGGAAACCCACTGGGAAAGATCTTCAAATTAAGGGTGAAGGAAGTTCCCGAGTCATTGGCTTCAAAAAGACTTTGGTTTTCTACAAAGATGGTTGTCCTCGTGGTGAAAGGACCAACTGGATCATGCATGAGTACCGTTTACATGATGCTTCTTCTACCCAGATTGTTTTATATCGCTTGAAAAAGAAACCAGAGAAAAAATCAAATAAGAGCGTGGATATAGTAGCCAATAATGAAGAACCACAGTCAAGCCACACAGTTCCTGACCTTGAAAATCACGAGACAGAGGAAATGATGCAGGAGCATTACGCTTTGCGAGACGAAATTTTGGCAACTGTTTTTCAGCCTTATAGTCCTTCACAGAATGACCTGTCTAGACTGCTGTCAACAAGTAGTCCGCGTCAAGAACAGTTTTTCCCTGATAATCATTTTGGCAATGTGCAATTTCGTTCTGATGCCAATGAAATGGAGGGTGATATTGTTGATGAGCTCTTCAATCCAGATATTGATCATCAAATATGCTGTATTGAAATATCAAATACCCTTGTCAATGATCCTACACCTCAAGCATCTTTGCAAAAGTATGGAGCACCCCCCCAAATCCTGTCTATTACTCCTATTCCTGCAGAATACCAGAATTATATTGATCCAATTAGTGATTCTGATGGTTCTGACCTCGATGAAGACATAGAGGAGGAGAATTCTACTGATGATGACGACTACTCACTGGTGGAAACTGACTCTTCTGCAATTATGGATTACAGATCTTATCTTCAAGGTCAAGCTAGAGAGGATTTTGACTTGTTGCGGGGTGCTACAGAAGAGGAGCTTTCGCAAATAACGTCACTCCTAAATGAGCAAGAGAGAGCAAATTCTGATGTGGATTCGCACAAACTTGAAACTGAATTTTTTGGTGGAAAAAGTTCAGAAAATGCATATGTAAAACCTGCGTGCAATCAATCATCTGTCAACAGCTGGAAAGCCCGTTCTCTCATTCACCTGGTGGCACCTCTTTCAAGCCGAAAACCATGTTCTCAATCAGTGTATCTTGTAAATACTATTATAGGTTTATTGCTGCTTGTGGCTGTGAGTTGGGATTTGGTGTCCTGTGGAACATGCTTGTAG 1404 0.4031 MSSTIFDLRSFPPGFGFHPKDEVLVNYYLKNKLLGNDDLVSHIPQVDICNFEPWQLPALSVIKSNDPPWFFFSFRNYKYTNSIRYGRKTECGFWKPTGKDLQIKGEGSSRVIGFKKTLVFYKDGCPRGERTNWIMHEYRLHDASSTQIVLYRLKKKPEKKSNKSVDIVANNEEPQSSHTVPDLENHETEEMMQEHYALRDEILATVFQPYSPSQNDLSRLLSTSSPRQEQFFPDNHFGNVQFRSDANEMEGDIVDELFNPDIDHQICCIEISNTLVNDPTPQASLQKYGAPPQILSITPIPAEYQNYIDPISDSDGSDLDEDIEEENSTDDDDYSLVETDSSAIMDYRSYLQGQAREDFDLLRGATEEELSQITSLLNEQERANSDVDSHKLETEFFGGKSSENAYVKPACNQSSVNSWKARSLIHLVAPLSSRKPCSQSVYLVNTIIGLLLLVAVSWDLVSCGTCL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00996 467 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Pte4g00996 467 MobiDBLite consensus disorder prediction 309 334 - -
Pte4g00996 467 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Pte4g00996 467 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 200 - -
Pte4g00996 467 MobiDBLite consensus disorder prediction 314 334 - -
Pte4g00996 467 ProSiteProfiles NAC domain profile. 11 156 IPR003441 GO:0003677|GO:0006355
Pte4g00996 467 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00996 Pte-Chr4 41127182 41131439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00996 8 162 NAC Transcription Factor Family AT4G35580 52.469 7.81e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte4g00996 NAM 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00996 - - ccaj:109788497 214.542