Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00995 ATGATGGAGATGACGGAAGAATCAAAAGGCTGTTCTGAAAAAGAAGAAGAGGAGGAGGAAGAAGATCATGTCTTAGTTAGAGACAAAAGGTTCTCACACCAAAATGGAGCAGCAATTAATTTCAACAGTAGGCGAGACCTCATGGACTTGTCACTTGGAAACAAAGATGCGGATGAAGTAACCGGTTTTATTCATGGTGGTGGCGGCAGCGGCGGCTGTAGTACTAGTGGTATTGGCGCAAGCTCTCTTAATAGCTGTGGCCACGATACGATCGAGAAAGAACATATGTTTGACAAGGTGGTGACTCCAAGCGATGTAGGCAAGCTCAACCGGTTAGTCATACCAAAGCAACACGCGGAAAAGTACTTCCCGCTTGACTCTTCAAGCAATGAGAAAGGGTTGCTTCTCAATTTCGAAGATAGAAATGGCAAGTCATGGAGGTTCAGGTACTCGTACTGGAATAGTAGTCAGAGTTATGTGATGACCAAAGGTTGGAGTCGTTTTGTCAAGGAGAAAAAGCTTGATGCTGGTGATATAGTGTCGTTTCAGCGAGGTATTGGTGATTTACACAAGCATCGCTTGTACATAGATTGGAGGAGAAGACCTGATCATCATCATCATGCATCTGATCATCACACTACAGGTTTGATATCACCACTTCTGATTTCAAATCAGACCCCCTTGCCTCAATACTCAATCAGATGGAGTGGTAGATTGTATTCACTGCCTCAACCATTGTCCATGTCCCGGCAGCAACATGAGCGTATGCAGCACCAAATGAATTACAACTTCCACCCCTACTATGATCATCATCATCAACAGCAGCAGCTTAATCATCTCCGTGACTCTTATGGAAGTGGTCATCAGCATTTCAATGAGGTTTACTTCAGTTCACCTGCTTCGACTAGTCTTCAAAATCGAGCAGTACGACAAGATGTTGGGGGTGCTCCAATGGTGATCGATTCAGTGCCAGTTGGTCATCACAGCGGTAAAGCCACAGCCAAAAAGCTTAGACTATTTGGGGTGAACATGGAGTATTCTCCATCACCAGATGAAGAACCGAGGTCATGCCACATATTGTCCTCTACTGTTCTACCACAAGTGAATGCAACGATGGCTATTCATCCAGTCCCACCTCCTCATCCTTCCTCTTCTCTCTCACCACTTCATTTGAGGCTACCTCATGTTGCTGCAATCCCATCTTACAATCAAGTAAGATTTCAGGAGAAAGGGGAAAGTTCGTTGCCTTTTGATTTGGATCCTTCAATGCCGTACTTCCAGTGA 1284 0.4478 MMEMTEESKGCSEKEEEEEEEDHVLVRDKRFSHQNGAAINFNSRRDLMDLSLGNKDADEVTGFIHGGGGSGGCSTSGIGASSLNSCGHDTIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDLHKHRLYIDWRRRPDHHHHASDHHTTGLISPLLISNQTPLPQYSIRWSGRLYSLPQPLSMSRQQHERMQHQMNYNFHPYYDHHHQQQQLNHLRDSYGSGHQHFNEVYFSSPASTSLQNRAVRQDVGGAPMVIDSVPVGHHSGKATAKKLRLFGVNMEYSPSPDEEPRSCHILSSTVLPQVNATMAIHPVPPPHPSSSLSPLHLRLPHVAAIPSYNQVRFQEKGESSLPFDLDPSMPYFQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00995 427 SMART B3_2 97 202 IPR003340 GO:0003677
Pte4g00995 427 Coils Coil 1 21 - -
Pte4g00995 427 Gene3D - 90 212 IPR015300 -
Pte4g00995 427 FunFam B3 domain-containing protein 90 212 - -
Pte4g00995 427 Pfam B3 DNA binding domain 97 201 IPR003340 GO:0003677
Pte4g00995 427 ProSiteProfiles B3 DNA-binding domain profile. 97 202 IPR003340 GO:0003677
Pte4g00995 427 SUPERFAMILY DNA-binding pseudobarrel domain 94 201 IPR015300 -
Pte4g00995 427 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 353 IPR044800 GO:0003700
Pte4g00995 427 CDD B3_DNA 95 184 IPR003340 GO:0003677
Pte4g00995 427 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00995 Pte-Chr4 41111350 41113973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00995 87 420 RAV Transcription Factor Family AT2G46870 45.977 5.38e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte4g00995 B3 5.5e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00995 K09287 - qsa:O6P43_018503 356.681