Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00992 ATGGATTTTGGAGGACCCAACCAGTCACGTTTGATTGGTGATTACATCATAGGACCTAGACTTGGGTTCGGTTCTTTTGCAGTTGTGTGGCGTTCAAGGCACCGTCAGTCTGGTTTGGAAGTTGCAATCAAAGAGATTGATAAGATACAACTTAGACAGAAAGTCAGTGAGAATTTGCTGAAAGAGATTTCCATTCTCAGTACCACCAATCACCCAAACATAATTCGTTTGTATGAAGTTATTGAGACCCAGGACAGGATTTACCTGGTGCTGGAGTATTGTGATCGTGGTGACCTTGCTGCTTATATTCATCATCATGGTAAAGTTTCAGAAATCATTGCTAGACATTTCATGAGGCAATTAGCTGCAGGATTAAAGGTGCTTCAAGAAAAGCATCTAATTCACAGAGATTTAAAACCACAGAACTTACTCTTGGCCACTAATGGGACATACCCACTTTTGAAGATCGGAGATTTTGGTTTTGCAAGGTCCCTCACTGATGGTCTCGCTGACACACTTTGTGGTTCACCATTGTATATGGCCCCTGAAATCATTCAGAACCAAAAATATGATGCAAAGGCTGATTTGTGGAGCGTTGGGGCAATCTTATTTCAGTTAGTGACTGGGCGGCCACCATTTGAAGGCAATTGTCAATTGCAGCTTTTTCAGAATGTTCTGACATCAACAGAGCTGCATTTCCCACCAGAGGCTATCAAGGAGCTGCATCCAGATTGCTTGGATCTTTGCAGAAGCCTATTACGTCAAAACCCTGTTGAGCGTCTGACTTTCAAGGAATTCTTCAACCACAAGTTCCTTAGGGAGCCCAGGTCTCTGGGGAATGTTGAACCATCTTTGCCTCTTCCGACTGAACATTTGATAGATGAGCAATCAGAATTTTTTCCATCTGACAACGGATCTCACTTGCACGCTAGGGAGCCGTCTGCCTCTGCTTTTCCTGGGGAATCATCTACCAAAGAACTGGTTCCTACCACCTCATTTGGCGATGAGAGCCCAAACCTTCAGAGAAATACAGGGGGGAAGACATCTAGCTTGGAAAATATTCATGATTTCACCTTAAATAGTATTGATAGAGAGAGAGTTAAGAATTATATTGGGGTTAATGTGCATCCAATAAACCAGCATGAGGCTTCAGATTCAATGGAGTCCATTGAGAGAGATTATGTATTGGTCAATCCTCATTTTGCTTCAGTGGAAGCTATCTCTATTTACCTTGAGACATCTGTTCAAGAAACTTCTTCAAATAGAGTTTCTATTTGTCCTTCAAAAGGTGATGACCAGGAGGTTAAAATAGCTGAGCAAACAAAGGAACCAGTTGCATGTTCTGCTGAAGAGGTCAAGTTGGAAAGCCACAATGTTTCTTCAATCCTAAGAAAAGTACAGGGCATATCCTTACTGCATCCGTCAAAGAGATTACAGTTGTTGTATCAGTATATCCAAATTCTCTCAGATATCTCGGACGAAAAGTATAAAGCTGAGCTTTATCCGGAATCATTTGCGGTGGAACTGGTTGTTTTAGCTGTATGGAAGAAAGCTCTCGATATTTGCAATTCATGGTTGAGTTCAGACAGAAGTACTTCCCCAGAAAGCAGCTTACCCGATGAATCCACATTTTCTCTGGAAGCAATGTCCTTGTCAGAAAGAACTAATGAAAACTTAGATTTTAGTGAAGCCTTATCTGTCTCCTCATGGATTAAACGAGGATTTGTTGATGCATTTGAACATGCAGAGAAATCGTCACTTCATATTCCAAGTACTGATGGTGGAGCTGAGATGCCGGATGCAATGAAAATTATATACGACAAGGCACTCTCCTTTGGGAAAAGCGGTGCTGTGGACGAGTATATGGAGAACAAGGGTAGTGCAATGGCATCCTACTCCAAAGCAATAATGCTGCTTTTTTTTATCGTGGGAGAAGCGGAAACTTTGACACTGAGACCTCCTTTTGTGTTGAGTGAGGTCGGTAAGGAGTTCATCCTGAAATTCATTCTCAACCTTCAATCACGCCAAACGCAGTCTTCAACCTTGAGCCCCTCTAATGTTCCATCAACAAGCAGAAACATCTAA 2085 0.4201 MDFGGPNQSRLIGDYIIGPRLGFGSFAVVWRSRHRQSGLEVAIKEIDKIQLRQKVSENLLKEISILSTTNHPNIIRLYEVIETQDRIYLVLEYCDRGDLAAYIHHHGKVSEIIARHFMRQLAAGLKVLQEKHLIHRDLKPQNLLLATNGTYPLLKIGDFGFARSLTDGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFEGNCQLQLFQNVLTSTELHFPPEAIKELHPDCLDLCRSLLRQNPVERLTFKEFFNHKFLREPRSLGNVEPSLPLPTEHLIDEQSEFFPSDNGSHLHAREPSASAFPGESSTKELVPTTSFGDESPNLQRNTGGKTSSLENIHDFTLNSIDRERVKNYIGVNVHPINQHEASDSMESIERDYVLVNPHFASVEAISIYLETSVQETSSNRVSICPSKGDDQEVKIAEQTKEPVACSAEEVKLESHNVSSILRKVQGISLLHPSKRLQLLYQYIQILSDISDEKYKAELYPESFAVELVVLAVWKKALDICNSWLSSDRSTSPESSLPDESTFSLEAMSLSERTNENLDFSEALSVSSWIKRGFVDAFEHAEKSSLHIPSTDGGAEMPDAMKIIYDKALSFGKSGAVDEYMENKGSAMASYSKAIMLLFFIVGEAETLTLRPPFVLSEVGKEFILKFILNLQSRQTQSSTLSPSNVPSTSRNI* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00992 694 SMART serkin_6 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00992 694 Gene3D Transferase(Phosphotransferase) domain 1 6 304 - -
Pte4g00992 694 MobiDBLite consensus disorder prediction 299 349 - -
Pte4g00992 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Pte4g00992 694 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00992 694 ProSiteProfiles Protein kinase domain profile. 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00992 694 FunFam Aurora kinase A 7 97 - -
Pte4g00992 694 FunFam Maternal embryonic leucine zipper kinase 7 296 - -
Pte4g00992 694 CDD STKc_ATG1_ULK_like 21 271 - -
Pte4g00992 694 MobiDBLite consensus disorder prediction 317 349 - -
Pte4g00992 694 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 8 609 IPR045269 GO:0004674|GO:0006914
Pte4g00992 694 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Pte4g00992 694 SUPERFAMILY Protein kinase-like (PK-like) 11 331 IPR011009 -
Pte4g00992 694 Pfam Domain of unknown function (DUF3543) 509 675 IPR022708 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00992 Pte-Chr4 41076856 41082993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00992 5 267 CBL-interacting serine-threonine protein kinases AT2G30360 37.638 7.62e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Pte4g00992 DUF3543 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00992 - K08269 qsa:O6P43_027452 785.408