Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00989 ATGGATAGGCTTCAAGGTCCAGTCAGTTCATTTTTCTTTGGGGAACATTTGGAAGCAAACTGTTTAGAGCAAAGTGCATTCAACACTATCACGAATAGCTTCAAATTCAGAGGGATTGATGAGGAACGAGAGCAGTTTAATATTCTGGGGTTAGAAGACAAAATGCCATTTTTACAAATGCTTCAAAGTGTGGAAACCTCAAAAGCTTTTCCCTTGAAAGAACCAAACTTTCAGACGCTTATGAGGTTACAGCACTTAAGAATGCCGTTGGAAGGAACAACTTTCATGCCCCAAATAGAGATTCATCATGTCCAAGCTTTAGAGCTTGAGAGCTGTGTGACACATGACATGGTGGAGCTACAATCCGCTGTGAAATATAAAAGCAACGACCTTCAACATCAACTTTCAGCTTCATACATGGATAGATTGTGCTCAGACTCCAATCAAGAACAACCAGCTTCAGCTGAAAATTGCAGCAGAGATGTTAAAGCGGAAACTGCAACTTCTTGGCCTAATCCACCACCTTGGCCTAAACAAACTCAGAGTTCAAAGTCTCAGGCAGTCACCCGGGAAAGAAGAAAGCGAAAGAGAACAAGACCAACCAAGAATAAACAAGACTTAGAAAACCAGCGAATGACTCACATTGCCGTTGAACGTAAACGGAGACGTCAAATGAATGATCATCTCAGTGTTCTAAGGTCGCTGATGCCTCCTTACTATGTTCAACGGGGTGACCAGGCATCAATAATTGGAGGTGCAATAGACTTCGTGAAGGAATTGGAGCAGTTGCTACAATCCCTTGAAGCACAAAAAAGAATGAGAAGGGGCGAAGACGTTGAATTTAATGGCTTTCTGGCTTCATCAGCACCAGATAATGGAGTTGGGTCGTGTACAGAAGGAGACTGTGGACAAGGAATGAGGGCAGAAAAGAAATCGGATGCAGCTGACATTGAGGTCACCGTGATTCACCCTCATGTCAACTTGAAAATTCAATGCTTAAGGAAATCTGGGGTGTTGTTGAAAGCCATAGTTGCTCTGGAGGATCTTAGGCTAACTGTCTTGCATCTGAACATTACTTCCTCACAGGATTTAGTCCTTTACTCATTCAATCTCAAGATTGAAGATGATTGCAAACTAGGATTAGCCAATGAGATTGCAGAAGCGGTTCAACAGATATTTAGTGTCATCCATGCTGCCCTAACTTGA 1206 0.4245 MDRLQGPVSSFFFGEHLEANCLEQSAFNTITNSFKFRGIDEEREQFNILGLEDKMPFLQMLQSVETSKAFPLKEPNFQTLMRLQHLRMPLEGTTFMPQIEIHHVQALELESCVTHDMVELQSAVKYKSNDLQHQLSASYMDRLCSDSNQEQPASAENCSRDVKAETATSWPNPPPWPKQTQSSKSQAVTRERRKRKRTRPTKNKQDLENQRMTHIAVERKRRRQMNDHLSVLRSLMPPYYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRRGEDVEFNGFLASSAPDNGVGSCTEGDCGQGMRAEKKSDAADIEVTVIHPHVNLKIQCLRKSGVLLKAIVALEDLRLTVLHLNITSSQDLVLYSFNLKIEDDCKLGLANEIAEAVQQIFSVIHAALT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00989 401 PANTHER MAX DIMERIZATION, MAD 152 398 - -
Pte4g00989 401 Pfam Helix-loop-helix DNA-binding domain 210 261 IPR011598 GO:0046983
Pte4g00989 401 MobiDBLite consensus disorder prediction 144 211 - -
Pte4g00989 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 278 IPR036638 GO:0046983
Pte4g00989 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 260 IPR011598 GO:0046983
Pte4g00989 401 Coils Coil 257 277 - -
Pte4g00989 401 MobiDBLite consensus disorder prediction 144 166 - -
Pte4g00989 401 SMART finulus 215 266 IPR011598 GO:0046983
Pte4g00989 401 CDD bHLH_AtFAMA_like 212 281 - -
Pte4g00989 401 Gene3D - 200 276 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00989 Pte-Chr4 41059579 41061613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00989 36 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 39.730 8.67e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte4g00989 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00989 - - qsa:O6P43_018514 458.373