Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00987 ATGGGGGAAGCAGTATTGATCGCGGGTACCGGTGAAGAGGGTACGATGGAGGTGGGGCTGGGAACAGAACAGGAGGAACAGAAGAAGAAGGATTGCAGCAAGGAGGTGAAAGATGACCGAGATGGTTGTGGCACTAAAGAAATTATAAGGTGGGAGAAGTTTTTACCTAGAGTGGTCTTGAGGGTTTTGCTCGTGGAAGCTGATGATTCAACTCGCCAGATTATATCTGCCCTTCTTCGTAAATGCTGCTATAGAGTTGCTGCAGTTGCTGATGGATTGAAGGCGTGGGAGACACTAAAGAGGAACTCTGATGACATAGATCTTATATTAACTGAAGTAGAACTGCCATCAATATCTGGATTTGCTCTTCTTACTCTAGTGATGGAGCACGATATTTCCAAGAACATTCCTGTTATAATGATGTCTTCACATGATTCAATTAGCACGGCATTGAAATGCATGCTGAAAGGTGCAGCGGACTTTCTGATAAAGCCTGTTCGGAGGAATGAGCTTCGAAACCTTTGGCAGCATGTGTGGAGAAGGCATACTCAAAAAGTTGAAGCCACTTCAGAAAATACTGCAGCAAGCAGTCTTTCAGGTGATTGTGTGGCTGACACTCAGCATAAAAAATGCGATGGCAAAGGAAGTGATATCCAAGGTTTGTGCCAACTAAAAAGTAAGATTGCTTCTAATTCGAGCAATGGCGGTGTGCAGAGAAATGAAGAATCTACCAAATTGGACAAGGAAATGGACATGCATGATTGTAAAGTTGGAGAAGAGACTGCAGTTTGCAATGAAGCTTTGAACTTAAAGAGTATGGACGCTGAAGAAGATCATGGCTCTGTTAAGACAGCAATTCAAGATAAACTTGTTAGACCAGAATGCAGTAGAGAAGATGCTATAGTCAGTATCCAAGCACATGACTGGGATAATGAAGTGGTTGAACAATCTAGAACAGCTGTTGACTTGATTGGAACATTTGACCAGGTTCTGAGGACCACTAATGGAAATTCTGGTGTCAATGATCAGAGAAACAAGTTTAATCTGACTCCACATCTGGAACTGTCTTTAAGAAATGGTCCTAGTGAATTGAATCAGCAACCAACAGATGAGAGACAAATTCTGAACCACTCTAATGCATCTGCATTTTCATGGTATAGTAGTAAACCTTTACAGTGCATTTCCTCCCTTTATCCTGAAGGTTCTGCGGAAGGAAATTCCTCCGATCACCATGGTTTTAGGAGCCATGAGCCTCGACAGTCTGGACAAGGGCAAGTACTTCCATCCATGTTCTGTCAAGACTCAGGTGTGAGATGGAGCGTCAATCAAGTATGCCACCCAGAGAACTCTACCTTTTCTCCTAATGCTTCTTTCCTGTCCAATGATGCTCACAATCATGGGTCTGAACATGGCTATCACTGGTCTGCTGTTGCAGCTCATAATCCAATTATGCTTGAACCTGTCCACGATCTGAAAAATTCAGTGCCTAAGGAGGAAGTAAGGCTTGGTTCTCCTTCTGCTGATCAGAGTGTCAGTACTGATGCTGCAAACCGTAATAACTGTAGCTCATATGGAAGTATGGGAAGTGGAAGTGATGGAAATGAATTTTCTGCAATGGCAGCTGTCAGCACTCGTGGATCTTTTGATGATGGCTCATGTTCTGTTCATGATGGGGTTAGAACAGATTGTCTCCGTACCATGCAAAGGGAAGCAGCTCTAACAAAATTCAGACTTAAGCGTAAAGATCGCTGCTTTGAGAAAAAGGTTAGATACCAAAGTCGGAAAAGACTGGCAGAGCAGCGTCCAAGAATGAAAGGACAGTTTGTACGGCTAGCACATACTGACCCCATCAGTAGCTGA 1860 0.4339 MGEAVLIAGTGEEGTMEVGLGTEQEEQKKKDCSKEVKDDRDGCGTKEIIRWEKFLPRVVLRVLLVEADDSTRQIISALLRKCCYRVAAVADGLKAWETLKRNSDDIDLILTEVELPSISGFALLTLVMEHDISKNIPVIMMSSHDSISTALKCMLKGAADFLIKPVRRNELRNLWQHVWRRHTQKVEATSENTAASSLSGDCVADTQHKKCDGKGSDIQGLCQLKSKIASNSSNGGVQRNEESTKLDKEMDMHDCKVGEETAVCNEALNLKSMDAEEDHGSVKTAIQDKLVRPECSREDAIVSIQAHDWDNEVVEQSRTAVDLIGTFDQVLRTTNGNSGVNDQRNKFNLTPHLELSLRNGPSELNQQPTDERQILNHSNASAFSWYSSKPLQCISSLYPEGSAEGNSSDHHGFRSHEPRQSGQGQVLPSMFCQDSGVRWSVNQVCHPENSTFSPNASFLSNDAHNHGSEHGYHWSAVAAHNPIMLEPVHDLKNSVPKEEVRLGSPSADQSVSTDAANRNNCSSYGSMGSGSDGNEFSAMAAVSTRGSFDDGSCSVHDGVRTDCLRTMQREAALTKFRLKRKDRCFEKKVRYQSRKRLAEQRPRMKGQFVRLAHTDPISS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00987 619 ProSiteProfiles CCT domain profile. 569 611 IPR010402 GO:0005515
Pte4g00987 619 Pfam Response regulator receiver domain 62 173 IPR001789 GO:0000160
Pte4g00987 619 SUPERFAMILY CheY-like 60 188 IPR011006 -
Pte4g00987 619 Gene3D - 60 250 - -
Pte4g00987 619 MobiDBLite consensus disorder prediction 505 529 - -
Pte4g00987 619 SMART REC_2 60 175 IPR001789 GO:0000160
Pte4g00987 619 MobiDBLite consensus disorder prediction 503 529 - -
Pte4g00987 619 MobiDBLite consensus disorder prediction 22 40 - -
Pte4g00987 619 ProSiteProfiles Response regulatory domain profile. 61 179 IPR001789 GO:0000160
Pte4g00987 619 Pfam CCT motif 569 610 IPR010402 GO:0005515
Pte4g00987 619 MobiDBLite consensus disorder prediction 16 40 - -
Pte4g00987 619 PANTHER TWO-COMPONENT RESPONSE REGULATOR 60 243 IPR045279 GO:0009736
Pte4g00987 619 MobiDBLite consensus disorder prediction 400 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00987 Pte-Chr4 41043769 41048970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00987 565 610 Response Regulator Gene Family AT5G24470 82.609 5.63e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pte4g00987 Response_reg 3.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00987 K12130 - qsa:O6P43_027438 524.242